General information for g2524.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative ATP-binding cassette sub-family G member 4.
Parent gene
- The parent gene g2524 is located on chr_3: 18432333..18434308 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2524 | g2524.t3 | isoform | g2524.t3 | 18431001 | 18431622 |
| chr_3 | g2524 | g2524.t3 | exon | g2524.t3.exon1 | 18431001 | 18431622 |
| chr_3 | g2524 | g2524.t3 | cds | g2524.t3.CDS1 | 18431002 | 18431478 |
| chr_3 | g2524 | g2524.t3 | TSS | g2524.t3 | 18431889 | 18431889 |
| chr_3 | g2524 | g2524.t3 | TTS | g2524.t3 | NA | NA |
Sequences
>g2524.t3 Gene=g2524 Length=622
GAAAAAAAGGAAATTTTAAAAAATATCTCTGGAGAATTTAACGGAGGTCATATAAATACA
ATCTTGGGTTTAAGCGGTAGCGGCAAAACAAGTCTTTTAAATGTTCTCTCAGGGTTTAAA
AAAACAAATGTAAGCGGAAAGATAATGATAAATGGTAGAGAAATCCCAGTTGATAAAATT
AGAAAAATTTCGTCATACGTAATGCAAGATCAGAGTCTTCATTCACATCTTACTACATGC
GAAATTGTGACACTCTCACTAAATTTAAGAGATAAAAATCAGCTGAGTGCCTCTGAAAGG
AAAAACAAAATTGAAAATTTGCTTTTAAAACTTAACATAGAAAATAAAAGAAATTCATTG
ATAAAAGACCTGAGTGGAGGTGAAATTAAACGACTTTCGATTGCAATTGAATTGGTAAAC
GATCCGAAAATTTTATTTCTCGATGAGCCAACTACAAATCTTGATAGTGTTTCATCAACA
CATTGCATTGAATTACTTAAAAAATTAGCAATTGATGAGAGAAAAATTATTGTGTGCACT
ATTCATCAACCTTCTACACTATTATTAAAAATGTTTGATCAAATTTATGCATTAGCTGAT
GGTCAATGTATTTTTCAAGGTT
>g2524.t3 Gene=g2524 Length=159
MINGREIPVDKIRKISSYVMQDQSLHSHLTTCEIVTLSLNLRDKNQLSASERKNKIENLL
LKLNIENKRNSLIKDLSGGEIKRLSIAIELVNDPKILFLDEPTTNLDSVSSTHCIELLKK
LAIDERKIIVCTIHQPSTLLLKMFDQIYALADGQCIFQG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g2524.t3 | Gene3D | G3DSA:3.40.50.300 | - | 1 | 159 | 0 |
| 2 | g2524.t3 | PANTHER | PTHR48041:SF78 | ABC TRANSPORTER EXPRESSED IN TRACHEA, ISOFORM A-RELATED | 2 | 159 | 0 |
| 3 | g2524.t3 | PANTHER | PTHR48041 | ABC TRANSPORTER G FAMILY MEMBER 28 | 2 | 159 | 0 |
| 1 | g2524.t3 | Pfam | PF00005 | ABC transporter | 8 | 103 | 0 |
| 4 | g2524.t3 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 4 | 159 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
