Gene loci information

Isoforms of this gene

  • There are 4 isoforms that are expressed from this gene.
  • The longest transcript is g2524.t1
  • List of isoforms

g2524.t1, g2524.t2, g2524.t3, g2524.t4

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

Pathway

  • This gene belongs to the following 1 pathways
ko01523
ko02010
ko04976

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g2524.t1) is OG0000031. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 9 XP_012063521.1, XP_012064186.1, XP_012062737.1, XP_012063520.1, XP_012064493.1, XP_012063523.1, XP_012064564.1, XP_012063408.1, XP_012062736.1
Apis mellifera AMELL 7 GB44771-PA, GB53043-PA, GB41616-PA, GB53045-PA, GB44772-PA, GB53046-PA, GB44751-PA
Culicoides sonorensis CSONO 4 CSON011372-1, CSON011370-1, CSON002675-2, CSON010477-1
Polypedilum nubifer PNUBI 9 Pn.11913, Pn.05833, Pn.15693, Pn.04052, Pn.02964, Pn.00864, Pn.09173, Pn.05834, Pn.15885
Polypedilum vanderplanki PVAND 12 g2524.t1, g14041.t1, g15452.t1, g1835.t1, g6043.t1, g6042.t1, g6040.t1, g2678.t1, g5011.t1, g2679.t1, g6039.t1, g10958.t1
Polypedilum pembai PPEMB 9 g10789.t1, g13635.t1, g1568.t1, g13634.t1, g14323.t1, g1924.t1, g12496.t1, g10991.t1, g1011.t1
Belgica antarctica BANTA 10 IU25_03060-mRNA-1, IU25_07929-mRNA-1, IU25_02046-mRNA-1, IU25_06625-mRNA-1, IU25_06628-mRNA-1, IU25_09187-mRNA-1, IU25_06629-mRNA-1, IU25_01479-mRNA-1, IU25_03061-mRNA-1, IU25_05112-mRNA-1
Clunio marinus CMARI 8 CRK90572.1, CRK94326.1, CRK94468.1, CRL06232.1, CRL06230.1, CRL02482.1, CRL00838.1, CRL06051.1
Aedes aegypti lvpagwg AAEGYL 10 AAEL008624-PC, AAEL008625-PA, AAEL008672-PB, AAEL008635-PB, AAEL008138-PB, AAEL026976-PA, AAEL008628-PB, AAEL008632-PA, AAEL019463-PA, AAEL019641-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 18 EDS33513.1, EDS30004.1, EDS38501.1, EDS38500.1, EDS38497.1, EDS38495.1, EDS38499.1, EDS40430.1, EDS38496.1, EDS38498.1, EDS30005.1, EDS38493.1, EDS27773.1, EDS43565.1, EDS38494.1, EDS42749.1, EDS29091.1, EDS30299.1
Culex quinquefasciatus CQUIN 18 CPIJ020198-PA, CPIJ012368-PA, CPIJ012371-PA, CPIJ012366-PA, CPIJ012370-PA, CPIJ018601-PA, CPIJ007191-PA, CPIJ012364-PA, CPIJ000553-PA, CPIJ001540-PA, CPIJ019125-PA, CPIJ004818-PA, CPIJ012369-PA, CPIJ014443-PA, CPIJ012365-PA, CPIJ007190-PA, CPIJ012367-PA, CPIJ012372-PA
Anopheles atroparvus AATRO 11 AATE002483-PA, AATE019394-PA, AATE003519-PA, AATE010916-PA, AATE011243-PA, AATE020194-PA, AATE007968-PA, AATE010511-PA, AATE019171-PA, AATE000269-PA, AATE014236-PA
Anopheles sinensis china ASINEC 9 ASIC008278-PA, ASIC014575-PA, ASIC007325-PA, ASIC002529-PA, ASIC007326-PA, ASIC010769-PA, ASIC007323-PA, ASIC007324-PA, ASIC007334-PA
Anopheles dirus ADIRU 7 ADIR006797-PA, ADIR006057-PA, ADIR002696-PA, ADIR006060-PA, ADIR006058-PA, ADIR011421-PA, ADIR005187-PA
Anopheles farauti AFARA 10 AFAF008676-PA, AFAF005290-PA, AFAF012995-PA, AFAF006240-PA, AFAF001359-PA, AFAF002021-PA, AFAF002523-PA, AFAF019198-PA, AFAF004396-PA, AFAF013061-PA
Anopheles epiroticus AEPIR 6 AEPI010894-PA, AEPI007395-PA, AEPI007860-PA, AEPI002849-PA, AEPI002417-PA, AEPI002852-PA
Anopheles christyi ACHRI 9 ACHR006924-PA, ACHR010225-PA, ACHR010053-PA, ACHR004913-PA, ACHR000429-PA, ACHR003769-PA, ACHR009173-PA, ACHR008236-PA, ACHR007999-PA
Anopheles merus AMERU 11 AMEM006574-PA, AMEM014560-PA, AMEM014997-PA, AMEM014990-PA, AMEM010679-PA, AMEM001305-PA, AMEM015139-PA, AMEM015901-PA, AMEM005535-PA, AMEM001455-PA, AMEM005729-PA
Anopheles melas AMELA 13 AMEC012847-PA, AMEC020752-PA, AMEC015789-PA, AMEC016563-PA, AMEC010347-PA, AMEC015455-PA, AMEC007971-PA, AMEC004946-PA, AMEC013136-PA, AMEC003011-PA, AMEC006277-PA, AMEC007704-PA, AMEC016882-PA
Anopheles arabiensis AARAB 11 AARA011910-PA, AARA016562-PA, AARA016362-PA, AARA016767-PB, AARA016561-PA, AARA018133-PB, AARA016559-PA, AARA009503-PA, AARA016560-PA, AARA018266-PA, AARA016558-PA
Anopheles coluzzii ACOLU 10 ACOM032349-PA, ACOM032339-PA, ACOM032350-PA, ACOM023734-PA, ACOM040737-PA, ACOM032345-PA, ACOM026790-PA, ACOM032346-PA, ACOM032347-PA, ACOM040618-PA
Anopheles coluzzii ngousso ACOLUN 11 ACON029451-PB, ACON008945-PA, ACON009467-PA, ACON028729-PA, ACON009471-PA, ACON009463-PA, ACON009472-PA, ACON008889-PA, ACON029500-PA, ACON009466-PA, ACON009468-PA
Anopheles gambiae AGAMB 11 AGAP029451-PA, AGAP009466-PA, AGAP028729-PA, AGAP009471-PA, AGAP009468-PA, AGAP008945-PA, AGAP009463-PA, AGAP009467-PA, AGAP008889-PA, AGAP029500-PA, AGAP009472-PA
Anopheles quadriannulatus AQUAD 7 AQUA007820-PA, AQUA007246-PA, AQUA011545-PA, AQUA008633-PA, AQUA004210-PA, AQUA008634-PA, AQUA008637-PA
Anopheles minimus AMINI 6 AMIN001846-PA, AMIN009389-PA, AMIN001655-PA, AMIN001844-PA, AMIN000431-PA, AMIN009574-PA
Anopheles culicifacies ACULI 9 ACUA027740-PA, ACUA024544-PA, ACUA013130-PA, ACUA026942-PA, ACUA020582-PA, ACUA016207-PA, ACUA027389-PA, ACUA003384-PA, ACUA009729-PA
Anopheles funestus AFUNE 10 AFUN015980-PA, AFUN020102-PA, AFUN003077-PA, AFUN005259-PA, AFUN015979-PA, AFUN015982-PA, AFUN015745-PA, AFUN010004-PA, AFUN015981-PA, AFUN015978-PA
Anopheles stephensi indian ASTEPI 7 ASTEI04963-PA, ASTEI01938-PA, ASTEI08760-PA, ASTEI07390-PA, ASTEI09638-PA, ASTEI06540-PA, ASTEI09637-PA
Anopheles stephensi ASTEP 6 ASTE007547-PA, ASTE009438-PA, ASTE009633-PA, ASTE007549-PA, ASTE005541-PA, ASTE009867-PA
Anopheles albimanus AALBI 9 AALB014164-PA, AALB001631-PA, AALB001634-PA, AALB001823-PA, AALB000627-PA, AALB002233-PA, AALB001630-PA, AALB000118-PA, AALB001553-PA
Anopheles darlingi ADARL 9 ADAC009956-PA, ADAC002749-PA, ADAC009967-PA, ADAC003957-PA, ADAC001103-PA, ADAC009965-PA, ADAC000160-PA, ADAC000157-PA, ADAC000161-PA
Drosophila willistoni DWILL 6 FBpp0253718, FBpp0378807, FBpp0378701, FBpp0378130, FBpp0243681, FBpp0374550
Drosophila pseudoobscura DPSEU 6 FBpp0339006, FBpp0334461, FBpp0287500, FBpp0287776, FBpp0287501, FBpp0280308
Drosophila persimilis DPERS 7 FBpp0190683, FBpp0180657, FBpp0190516, FBpp0178150, FBpp0190517, FBpp0183302, FBpp0180668
Drosophila ananassae DANAN 6 FBpp0117339, FBpp0348796, FBpp0350947, FBpp0118882, FBpp0117079, FBpp0118881
Drosophila melanogaster DMELA 6 FBpp0077812, FBpp0306278, FBpp0077292, FBpp0077291, FBpp0079489, FBpp0077116
Drosophila sechellia DSECH 6 FBpp0199633, FBpp0199835, FBpp0193569, FBpp0199632, FBpp0198177, FBpp0199940
Drosophila simulans DSIMU 6 FBpp0221168, FBpp0221679, FBpp0313274, FBpp0221390, FBpp0220723, FBpp0221169
Drosophila erecta DEREC 6 FBpp0369771, FBpp0142996, FBpp0143423, FBpp0142538, FBpp0143538, FBpp0142995
Drosophila yakuba DYAKU 6 FBpp0360766, FBpp0259923, FBpp0259919, FBpp0263184, FBpp0263290, FBpp0255147
Drosophila virilis DVIRI 6 FBpp0230641, FBpp0231793, FBpp0232140, FBpp0230621, FBpp0232723, FBpp0232139
Drosophila mojavensis DMOJA 5 FBpp0167168, FBpp0167093, FBpp0384858, FBpp0167169, FBpp0160224
Drosophila grimshawi DGRIM 6 FBpp0145070, FBpp0143974, FBpp0145555, FBpp0418129, FBpp0404454, FBpp0145556
Lucilia cuprina LCUPR 6 KNC33510, KNC31437, KNC20968, KNC20977, KNC29189, KNC29188
Musca domestica MDOME 6 MDOA011369-PA, MDOA014207-PA, MDOA000888-PA, MDOA010369-PB, MDOA001558-PA, MDOA000696-PA
Stomoxys calcitrans SCALC 6 SCAU010028-PA, SCAU006053-PA, SCAU007174-PA, SCAU006893-PA, SCAU005865-PA, SCAU009890-PA
Glossina brevipalpis GBREV 6 GBRI001886-PA, GBRI039121-PA, GBRI001908-PA, GBRI020010-PA, GBRI023036-PA, GBRI039124-PA
Glossina palpalis GPALP 6 GPPI046521-PA, GPPI046047-PA, GPPI022705-PA, GPPI022707-PA, GPPI019895-PA, GPPI019881-PA
Glossina austeni GAUST 8 GAUT029660-PA, GAUT009392-PA, GAUT034396-PA, GAUT029026-PA, GAUT009394-PA, GAUT009856-PA, GAUT045845-PA, GAUT009855-PA
Glossina pallidipes GPALL 6 GPAI016354-PA, GPAI047988-PA, GPAI040082-PA, GPAI016234-PA, GPAI006509-PA, GPAI016233-PA
Glossina morsitans GMORS 6 GMOY003689-PA, GMOY006639-PA, GMOY006745-PA, GMOY003688-PA, GMOY003117-PA, GMOY002225-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g2524.t1) is OG0008345. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON none
Parochlus steinenii PSTEI none
Trissopelopia nemorum TNEMO none
Paraheptagyia tonnoiri PTONN none
Telmatogeton pecinata TPECI none
Cricotopus draysoni CDRAY none
Clunio marinus CMARI none
Cardiocladius sp CARDI none
Belgica antarctica BANTA none
Kiefferophyes invenustulus KINVE none
Chironomus riparius CRIPA g7269.t1, g12830.t1, g17991.t1
Chironomus columbiensis CCOLU TRINITY_DN5228_c0_g1_i12.p1, TRINITY_DN8665_c0_g1_i8.p1, TRINITY_DN5228_c0_g2_i1.p1, TRINITY_DN3914_c0_g2_i13.p1, TRINITY_DN9345_c0_g1_i3.p1
Chironomus tentans CTENT g7260.t1, g3725.t1, g3266.t1
Chironomus dilutus CDILU TRINITY_DN4956_c0_g2_i2.p1, TRINITY_DN4250_c0_g2_i2.p1, TRINITY_DN4250_c0_g1_i2.p1, TRINITY_DN2099_c1_g2_i1.p1, TRINITY_DN6655_c0_g1_i1.p1, TRINITY_DN2099_c1_g3_i1.p1
Polypedilum nubifer PNUBI none
Polypedilum vanderplanki PVAND g2524.t1, g15452.t1, g2678.t1
Polypedilum pembai PPEMB g1011.t1
Culicoides sonorensis CSONO none
Aedes aegypti lvpagwg AAEGYL none
Anopheles gambiae AGAMB none

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation