Gene loci information

Isoforms of this gene

  • There are 1 isoforms that are expressed from this gene.
  • The longest transcript is g4004.t1
  • List of isoforms

g4004.t1

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

This gene did not have any KEGG Ortholog annotations (KAAS, GHOSTZ).

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g4004.t1) is OG0000018. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 10 XP_012055611.1, XP_012064130.1, XP_012057477.1, XP_012063349.1, XP_012057344.1, XP_012056832.1, XP_012057497.1, XP_012063976.1, XP_012055789.1, XP_012062781.1
Apis mellifera AMELL 14 GB42592-PA, GB44470-PA, GB42226-PA, GB40331-PA, GB45500-PA, GB44472-PA, GB54796-PA, GB51582-PA, GB52781-PA, GB51950-PA, GB49611-PA, GB56017-PA, GB49866-PA, GB45501-PA
Culicoides sonorensis CSONO 16 CSON005207-1, CSON003328-1, CSON005366-1, CSON000788-1, CSON005628-1, CSON000893-1, CSON009307-1, CSON003329-1, CSON006305-1, CSON010796-1, CSON015294-1, CSON003332-1, CSON009285-1, CSON004360-1, CSON006710-1, CSON011830-1
Polypedilum nubifer PNUBI 12 Pn.07891, Pn.02783, Pn.00666, Pn.09760, Pn.12705, Pn.12119, Pn.14600, Pn.11313, Pn.08186, Pn.08082, Pn.09529, Pn.08445
Polypedilum vanderplanki PVAND 9 g6543.t1, g12720.t1, g4234.t1, g10101.t1, g9639.t1, g13703.t1, g4004.t1, g5561.t1, g7582.t2
Polypedilum pembai PPEMB 10 g7280.t1, g12287.t1, g9165.t1, g15046.t1, g656.t1, g11480.t1, g4676.t1, g7070.t1, g9888.t1, g11925.t1
Belgica antarctica BANTA 12 IU25_07439-mRNA-1, IU25_00745-mRNA-1, IU25_10555-mRNA-1, IU25_07620-mRNA-1, IU25_08621-mRNA-1, IU25_10556-mRNA-1, IU25_07438-mRNA-1, IU25_05363-mRNA-1, IU25_00152-mRNA-1, IU25_07444-mRNA-1, IU25_08620-mRNA-1, IU25_00153-mRNA-1
Clunio marinus CMARI 11 CRK92959.1, CRK92210.1, CRK89523.1, CRK99936.1, CRK89519.1, CRK92966.1, CRK93174.1, CRK89512.1, CRK93173.1, CRL05881.1, CRK89516.1
Aedes aegypti lvpagwg AAEGYL 8 AAEL007831-PA, AAEL027544-PA, AAEL025283-PA, AAEL022895-PA, AAEL002740-PC, AAEL014848-PC, AAEL019502-PC, AAEL018154-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 16 EDS45397.1, EDS38533.1, EDS27413.1, EDS44096.1, EDS28291.1, EDS37976.1, EDS31821.1, EDS36373.1, EDS28292.1, EDS41419.1, EDS42334.1, EDS45396.1, EDS38245.1, EDS38534.1, EDS37977.1, EDS45398.1
Culex quinquefasciatus CQUIN 16 CPIJ005281-PA, CPIJ008539-PA, CPIJ001042-PA, CPIJ004100-PA, CPIJ013334-PA, CPIJ015363-PA, CPIJ012080-PA, CPIJ012522-PA, CPIJ013333-PA, CPIJ006790-PA, CPIJ003197-PA, CPIJ006791-PA, CPIJ005283-PA, CPIJ012521-PA, CPIJ005282-PA, CPIJ016464-PA
Anopheles atroparvus AATRO 11 AATE017848-PA, AATE018560-PA, AATE010168-PA, AATE000382-PA, AATE012957-PA, AATE006621-PA, AATE009090-PA, AATE013099-PA, AATE011094-PA, AATE005328-PA, AATE004648-PA
Anopheles sinensis china ASINEC 10 ASIC010736-PA, ASIC017800-PA, ASIC013838-PA, ASIC020678-PA, ASIC020677-PA, ASIC013837-PA, ASIC004443-PA, ASIC004441-PA, ASIC010737-PA, ASIC015213-PA
Anopheles dirus ADIRU 8 ADIR006769-PA, ADIR000464-PA, ADIR001763-PA, ADIR000620-PA, ADIR011662-PA, ADIR003868-PA, ADIR000619-PA, ADIR006771-PA
Anopheles farauti AFARA 13 AFAF020309-PA, AFAF011497-PA, AFAF020667-PA, AFAF019974-PA, AFAF001542-PA, AFAF020706-PA, AFAF012066-PA, AFAF017605-PA, AFAF015671-PA, AFAF013036-PA, AFAF010420-PA, AFAF005617-PA, AFAF008990-PA
Anopheles epiroticus AEPIR 9 AEPI002442-PA, AEPI002445-PA, AEPI005944-PA, AEPI002460-PA, AEPI010967-PA, AEPI004380-PA, AEPI002444-PA, AEPI006213-PA, AEPI004981-PA
Anopheles christyi ACHRI 9 ACHR008110-PA, ACHR005574-PA, ACHR010176-PA, ACHR010250-PA, ACHR006212-PA, ACHR009502-PA, ACHR008525-PA, ACHR008699-PA, ACHR010131-PA
Anopheles merus AMERU 13 AMEM002936-PA, AMEM001130-PA, AMEM008926-PA, AMEM003612-PA, AMEM007174-PA, AMEM006215-PA, AMEM001610-PA, AMEM014657-PA, AMEM010415-PA, AMEM003064-PA, AMEM002726-PA, AMEM016498-PA, AMEM004375-PA
Anopheles melas AMELA 17 AMEC014970-PA, AMEC001260-PA, AMEC003288-PA, AMEC016887-PA, AMEC013308-PA, AMEC000853-PA, AMEC017802-PA, AMEC006434-PA, AMEC022341-PA, AMEC015290-PA, AMEC005174-PA, AMEC021168-PA, AMEC000828-PA, AMEC018430-PA, AMEC000122-PA, AMEC005195-PA, AMEC010052-PA
Anopheles arabiensis AARAB 7 AARA018196-PA, AARA018110-PA, AARA000299-PA, AARA000298-PA, AARA001933-PA, AARA010546-PA, AARA003085-PA
Anopheles coluzzii ACOLU 11 ACOM035119-PA, ACOM030702-PA, ACOM035376-PA, ACOM040762-PA, ACOM040767-PA, ACOM032811-PA, ACOM023190-PA, ACOM035107-PA, ACOM023187-PA, ACOM026303-PA, ACOM034192-PA
Anopheles coluzzii ngousso ACOLUN 6 ACON011143-PA, ACON000215-PA, ACON009293-PA, ACON008868-PA, ACON012501-PA, ACON001483-PA
Anopheles gambiae AGAMB 6 AGAP011143-PA, AGAP008868-PA, AGAP012501-PA, AGAP009293-PA, AGAP001483-PA, AGAP000215-PA
Anopheles quadriannulatus AQUAD 10 AQUA005122-PA, AQUA003376-PA, AQUA000369-PA, AQUA004620-PA, AQUA014383-PA, AQUA006663-PA, AQUA004622-PA, AQUA007250-PA, AQUA007848-PA, AQUA011370-PA
Anopheles minimus AMINI 11 AMIN005538-PA, AMIN001626-PA, AMIN008435-PA, AMIN001627-PA, AMIN002381-PA, AMIN006873-PA, AMIN001735-PA, AMIN002392-PA, AMIN001630-PA, AMIN010197-PA, AMIN000129-PA
Anopheles culicifacies ACULI 13 ACUA020281-PA, ACUA013528-PA, ACUA022933-PA, ACUA024217-PA, ACUA009984-PA, ACUA017888-PA, ACUA004075-PA, ACUA025567-PA, ACUA006647-PA, ACUA021762-PA, ACUA003607-PA, ACUA010092-PA, ACUA022820-PA
Anopheles funestus AFUNE 7 AFUN020736-PA, AFUN003336-PA, AFUN003335-PA, AFUN001257-PA, AFUN006854-PA, AFUN020196-PA, AFUN019881-PA
Anopheles stephensi indian ASTEPI 8 ASTEI04985-PA, ASTEI05735-PA, ASTEI07263-PA, ASTEI10284-PA, ASTEI02406-PA, ASTEI05650-PA, ASTEI04987-PA, ASTEI01078-PA
Anopheles stephensi ASTEP 11 ASTE010968-PA, ASTE009604-PA, ASTE008840-PA, ASTE009605-PA, ASTE000735-PA, ASTE009607-PA, ASTE004087-PA, ASTE000844-PA, ASTE000845-PA, ASTE005156-PA, ASTE001574-PA
Anopheles albimanus AALBI 16 AALB010089-PA, AALB001796-PA, AALB001797-PA, AALB015730-PA, AALB004184-PA, AALB000295-PA, AALB000327-PA, AALB007626-PA, AALB000294-PA, AALB007070-PA, AALB004181-PA, AALB001800-PA, AALB009250-PA, AALB001799-PA, AALB008791-PA, AALB009739-PA
Anopheles darlingi ADARL 3 ADAC005280-PA, ADAC004891-PA, ADAC002857-PA
Drosophila willistoni DWILL 11 FBpp0376308, FBpp0376301, FBpp0253561, FBpp0379950, FBpp0379083, FBpp0377771, FBpp0239469, FBpp0377546, FBpp0254101, FBpp0373808, FBpp0374106
Drosophila pseudoobscura DPSEU 9 FBpp0330911, FBpp0277481, FBpp0273276, FBpp0332368, FBpp0277090, FBpp0340519, FBpp0330882, FBpp0280503, FBpp0336867
Drosophila persimilis DPERS 8 FBpp0175029, FBpp0182772, FBpp0177151, FBpp0183093, FBpp0175405, FBpp0177148, FBpp0182995, FBpp0180637
Drosophila ananassae DANAN 9 FBpp0124385, FBpp0124281, FBpp0122365, FBpp0117300, FBpp0115250, FBpp0116515, FBpp0344213, FBpp0118438, FBpp0348656
Drosophila melanogaster DMELA 9 FBpp0071889, FBpp0291586, FBpp0071169, FBpp0423136, FBpp0111504, FBpp0309767, FBpp0070747, FBpp0072133, FBpp0077730
Drosophila sechellia DSECH 10 FBpp0202605, FBpp0202616, FBpp0202637, FBpp0193220, FBpp0199902, FBpp0198232, FBpp0197061, FBpp0194119, FBpp0193217, FBpp0196975
Drosophila simulans DSIMU 9 FBpp0328374, FBpp0317433, FBpp0314253, FBpp0313220, FBpp0221438, FBpp0223403, FBpp0324765, FBpp0223484, FBpp0318921
Drosophila erecta DEREC 9 FBpp0142489, FBpp0368303, FBpp0138614, FBpp0137315, FBpp0143278, FBpp0370070, FBpp0138530, FBpp0137574, FBpp0137039
Drosophila yakuba DYAKU 9 FBpp0359417, FBpp0256617, FBpp0271074, FBpp0355555, FBpp0256527, FBpp0262445, FBpp0261820, FBpp0261422, FBpp0261956
Drosophila virilis DVIRI 10 FBpp0232205, FBpp0230915, FBpp0394270, FBpp0233691, FBpp0394866, FBpp0235401, FBpp0395642, FBpp0394629, FBpp0234874, FBpp0229305
Drosophila mojavensis DMOJA 9 FBpp0386930, FBpp0169937, FBpp0164732, FBpp0388268, FBpp0389141, FBpp0170692, FBpp0390572, FBpp0387718, FBpp0384033
Drosophila grimshawi DGRIM 10 FBpp0415007, FBpp0407989, FBpp0403051, FBpp0420546, FBpp0407822, FBpp0156973, FBpp0413615, FBpp0408483, FBpp0158363, FBpp0407253
Lucilia cuprina LCUPR 13 KNC34550, KNC29367, KNC32180, KNC24601, KNC25629, KNC32034, KNC32183, KNC29370, KNC29365, KNC24598, KNC20833, KNC22192, KNC26221
Musca domestica MDOME 10 MDOA001446-PA, MDOA016060-PA, MDOA002398-PB, MDOA006824-PB, MDOA003070-PA, MDOA000990-PA, MDOA002842-PA, MDOA009417-PB, MDOA003511-PA, MDOA006029-PB
Stomoxys calcitrans SCALC 9 SCAU010772-PA, SCAU009876-PA, SCAU001190-PA, SCAU003509-PB, SCAU008145-PA, SCAU014920-PA, SCAU005783-PA, SCAU002102-PA, SCAU009303-PA
Glossina brevipalpis GBREV 16 GBRI011122-PA, GBRI033148-PA, GBRI025384-PA, GBRI012407-PA, GBRI044886-PA, GBRI044925-PA, GBRI012410-PA, GBRI033147-PA, GBRI030923-PA, GBRI030903-PA, GBRI021687-PA, GBRI015491-PA, GBRI012409-PA, GBRI030909-PA, GBRI028120-PA, GBRI034605-PA
Glossina palpalis GPALP 18 GPPI037616-PA, GPPI016320-PA, GPPI031103-PA, GPPI025507-PA, GPPI007354-PA, GPPI037603-PA, GPPI051504-PA, GPPI037618-PA, GPPI002850-PA, GPPI021963-PA, GPPI025963-PA, GPPI009131-PA, GPPI025506-PA, GPPI050110-PA, GPPI009762-PA, GPPI033109-PA, GPPI025823-PA, GPPI037604-PA
Glossina austeni GAUST 19 GAUT001640-PA, GAUT026622-PA, GAUT012027-PA, GAUT012004-PA, GAUT014644-PA, GAUT012024-PA, GAUT051433-PA, GAUT022221-PA, GAUT011573-PA, GAUT029128-PA, GAUT014640-PA, GAUT012010-PA, GAUT022226-PA, GAUT001641-PA, GAUT045337-PA, GAUT022211-PA, GAUT051420-PA, GAUT001639-PA, GAUT033619-PA
Glossina pallidipes GPALL 17 GPAI008331-PA, GPAI001720-PA, GPAI017287-PA, GPAI035542-PA, GPAI021842-PA, GPAI027570-PA, GPAI035541-PA, GPAI020294-PA, GPAI018822-PA, GPAI035540-PA, GPAI027671-PA, GPAI018830-PA, GPAI021843-PA, GPAI017286-PA, GPAI020283-PA, GPAI034909-PA, GPAI007065-PA
Glossina morsitans GMORS 11 GMOY006617-PA, GMOY005949-PA, GMOY004722-PA, GMOY004763-PA, GMOY000091-PA, GMOY001174-PA, GMOY006650-PA, GMOY010386-PA, GMOY004723-PA, GMOY007598-PA, GMOY007983-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g4004.t1) is OG0004552. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN37508_c0_g1_i1.p1, TRINITY_DN10557_c0_g1_i4.p1
Parochlus steinenii PSTEI PSG00758
Trissopelopia nemorum TNEMO none
Paraheptagyia tonnoiri PTONN none
Telmatogeton pecinata TPECI TRINITY_DN12554_c0_g1_i1.p1
Cricotopus draysoni CDRAY TRINITY_DN89211_c0_g1_i1.p1, TRINITY_DN103206_c0_g1_i1.p1
Clunio marinus CMARI CRL05881.1, CRK89516.1
Cardiocladius sp CARDI TRINITY_DN49348_c0_g1_i1.p1, TRINITY_DN28329_c0_g1_i2.p1
Belgica antarctica BANTA IU25_07439-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN34538_c0_g1_i2.p1, TRINITY_DN169591_c0_g1_i1.p1, TRINITY_DN229313_c0_g1_i1.p1, TRINITY_DN34538_c0_g2_i2.p1, TRINITY_DN4355_c0_g2_i1.p1, TRINITY_DN17734_c0_g1_i4.p1
Chironomus riparius CRIPA g1073.t1
Chironomus columbiensis CCOLU TRINITY_DN57655_c0_g1_i1.p1
Chironomus tentans CTENT g9220.t1
Chironomus dilutus CDILU TRINITY_DN23802_c0_g1_i1.p1
Polypedilum nubifer PNUBI Pn.09529
Polypedilum vanderplanki PVAND g4004.t1
Polypedilum pembai PPEMB g11480.t1
Culicoides sonorensis CSONO CSON015294-1, CSON003329-1
Aedes aegypti lvpagwg AAEGYL AAEL007831-PA
Anopheles gambiae AGAMB AGAP012501-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation