Gene loci information

Isoforms of this gene

  • There are 1 isoforms that are expressed from this gene.
  • The longest transcript is g4800.t1
  • List of isoforms

g4800.t1

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

This gene did not have any KEGG Ortholog annotations (KAAS, GHOSTZ).

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g4800.t1) is OG0000081. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 1 XP_012054738.1
Apis mellifera AMELL 2 GB55242-PA, GB43740-PA
Culicoides sonorensis CSONO 7 CSON009818-1, CSON008242-1, CSON006837-1, CSON012599-1, CSON012539-1, CSON004293-1, CSON012597-1
Polypedilum nubifer PNUBI 12 Pn.08898, Pn.07443, Pn.14010, Pn.11221, Pn.03705, Pn.07448, Pn.14874, Pn.14011, Pn.07444, Pn.07447, Pn.07449, Pn.11273
Polypedilum vanderplanki PVAND 14 g6443.t1, g4800.t1, g6439.t1, g6440.t1, g6438.t4, g12475.t1, g5771.t1, g5325.t27, g6436.t1, g17086.t1, g6437.t1, g5606.t1, g12474.t1, g5326.t1
Polypedilum pembai PPEMB 11 g14192.t1, g2201.t1, g13593.t1, g11603.t1, g2092.t1, g11598.t1, g11600.t1, g2776.t1, g2198.t1, g11599.t1, g2091.t1
Belgica antarctica BANTA 7 IU25_01549-mRNA-1, IU25_12263-mRNA-1, IU25_00634-mRNA-1, IU25_00635-mRNA-1, IU25_00638-mRNA-1, IU25_00637-mRNA-1, IU25_00636-mRNA-1
Clunio marinus CMARI 9 CRL01284.1, CRL00353.1, CRK90675.1, CRL01124.1, CRL01125.1, CRL01123.1, CRL01127.1, CRK90582.1, CRL01283.1
Aedes aegypti lvpagwg AAEGYL 3 AAEL007349-PB, AAEL007342-PA, AAEL007344-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 2 EDS42498.1, EDS42499.1
Culex quinquefasciatus CQUIN 2 CPIJ015442-PA, CPIJ015443-PA
Anopheles atroparvus AATRO 3 AATE019576-PA, AATE009947-PA, AATE016100-PA
Anopheles sinensis china ASINEC 4 ASIC010817-PA, ASIC010818-PA, ASIC010815-PA, ASIC010820-PA
Anopheles dirus ADIRU 5 ADIR004723-PA, ADIR004724-PA, ADIR004722-PA, ADIR004721-PA, ADIR004725-PA
Anopheles farauti AFARA 3 AFAF007978-PA, AFAF019484-PA, AFAF012119-PA
Anopheles epiroticus AEPIR 4 AEPI010993-PA, AEPI010996-PA, AEPI010995-PA, AEPI010994-PA
Anopheles christyi ACHRI 0 none
Anopheles merus AMERU 3 AMEM016867-PA, AMEM019543-PA, AMEM007424-PA
Anopheles melas AMELA 2 AMEC001837-PA, AMEC005550-PA
Anopheles arabiensis AARAB 4 AARA016120-PA, AARA006534-PA, AARA016119-PA, AARA006533-PA
Anopheles coluzzii ACOLU 5 ACOM029179-PA, ACOM042433-PA, ACOM042416-PA, ACOM042397-PA, ACOM042415-PA
Anopheles coluzzii ngousso ACOLUN 5 ACON009053-PA, ACON009051-PA, ACON028085-PA, ACON009052-PA, ACON009054-PA
Anopheles gambiae AGAMB 5 AGAP009054-PA, AGAP009053-PA, AGAP009051-PA, AGAP028085-PA, AGAP009052-PA
Anopheles quadriannulatus AQUAD 4 AQUA006004-PA, AQUA006003-PA, AQUA017290-PA, AQUA017289-PA
Anopheles minimus AMINI 4 AMIN001051-PA, AMIN001049-PA, AMIN001050-PA, AMIN014490-PA
Anopheles culicifacies ACULI 1 ACUA006382-PA
Anopheles funestus AFUNE 6 AFUN010626-PB, AFUN016626-PA, AFUN010625-PA, AFUN016682-PA, AFUN003781-PA, AFUN016683-PA
Anopheles stephensi indian ASTEPI 3 ASTEI09782-PA, ASTEI09780-PA, ASTEI09781-PA
Anopheles stephensi ASTEP 3 ASTE004294-PA, ASTE004295-PA, ASTE004296-PA
Anopheles albimanus AALBI 4 AALB001071-PA, AALB016120-PA, AALB001070-PA, AALB016121-PA
Anopheles darlingi ADARL 3 ADAC003558-PA, ADAC003560-PA, ADAC003559-PA
Drosophila willistoni DWILL 8 FBpp0250588, FBpp0250586, FBpp0250587, FBpp0250584, FBpp0250583, FBpp0250589, FBpp0250585, FBpp0377000
Drosophila pseudoobscura DPSEU 9 FBpp0277550, FBpp0277557, FBpp0277554, FBpp0277551, FBpp0277548, FBpp0277552, FBpp0277549, FBpp0277555, FBpp0277556
Drosophila persimilis DPERS 8 FBpp0175473, FBpp0175468, FBpp0175469, FBpp0175472, FBpp0175475, FBpp0175470, FBpp0175471, FBpp0175474
Drosophila ananassae DANAN 7 FBpp0114474, FBpp0114475, FBpp0114830, FBpp0114828, FBpp0114827, FBpp0348775, FBpp0114473
Drosophila melanogaster DMELA 8 FBpp0312413, FBpp0071774, FBpp0301555, FBpp0290485, FBpp0100005, FBpp0290484, FBpp0071778, FBpp0071773
Drosophila sechellia DSECH 8 FBpp0197412, FBpp0197416, FBpp0197411, FBpp0197409, FBpp0197414, FBpp0197410, FBpp0197408, FBpp0197413
Drosophila simulans DSIMU 8 FBpp0210087, FBpp0210090, FBpp0210086, FBpp0210093, FBpp0210094, FBpp0210088, FBpp0210089, FBpp0210091
Drosophila erecta DEREC 7 FBpp0141328, FBpp0139610, FBpp0367961, FBpp0139607, FBpp0141326, FBpp0141325, FBpp0139609
Drosophila yakuba DYAKU 8 FBpp0259021, FBpp0259018, FBpp0259019, FBpp0259016, FBpp0259015, FBpp0259017, FBpp0354916, FBpp0259013
Drosophila virilis DVIRI 12 FBpp0236449, FBpp0396243, FBpp0236446, FBpp0391586, FBpp0236453, FBpp0236450, FBpp0236445, FBpp0392669, FBpp0236451, FBpp0236444, FBpp0396379, FBpp0236448
Drosophila mojavensis DMOJA 11 FBpp0169522, FBpp0169517, FBpp0169524, FBpp0169523, FBpp0169520, FBpp0169516, FBpp0169515, FBpp0169526, FBpp0169518, FBpp0169521, FBpp0169525
Drosophila grimshawi DGRIM 10 FBpp0153674, FBpp0419267, FBpp0153676, FBpp0153675, FBpp0405403, FBpp0153668, FBpp0153667, FBpp0153671, FBpp0153672, FBpp0153673
Lucilia cuprina LCUPR 5 KNC27328, KNC20944, KNC27330, KNC20940, KNC32965
Musca domestica MDOME 8 MDOA008592-PA, MDOA008053-PA, MDOA002350-PA, MDOA016266-PA, MDOA005785-PA, MDOA010131-PA, MDOA014320-PB, MDOA004549-PA
Stomoxys calcitrans SCALC 7 SCAU003946-PA, SCAU003459-PA, SCAU000706-PA, SCAU012835-PA, SCAU008105-PA, SCAU004006-PA, SCAU001204-PA
Glossina brevipalpis GBREV 4 GBRI044435-PA, GBRI044437-PA, GBRI044429-PA, GBRI044430-PA
Glossina palpalis GPALP 3 GPPI040558-PA, GPPI040562-PA, GPPI040557-PA
Glossina austeni GAUST 3 GAUT003086-PA, GAUT003102-PA, GAUT003088-PA
Glossina pallidipes GPALL 2 GPAI029041-PA, GPAI029040-PA
Glossina morsitans GMORS 2 GMOY004800-PA, GMOY004802-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g4800.t1) is OG0008284. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON none
Parochlus steinenii PSTEI none
Trissopelopia nemorum TNEMO none
Paraheptagyia tonnoiri PTONN TRINITY_DN2432_c0_g2_i1.p1, TRINITY_DN9465_c0_g3_i1.p1, TRINITY_DN9465_c0_g4_i1.p1, TRINITY_DN12258_c0_g1_i2.p1
Telmatogeton pecinata TPECI TRINITY_DN7505_c0_g1_i4.p1, TRINITY_DN0_c1604_g2_i1.p1, TRINITY_DN0_c1604_g1_i1.p1
Cricotopus draysoni CDRAY TRINITY_DN104984_c0_g1_i1.p1
Clunio marinus CMARI CRK90675.1
Cardiocladius sp CARDI TRINITY_DN9661_c0_g1_i19.p1
Belgica antarctica BANTA IU25_00638-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN8170_c0_g1_i6.p1, TRINITY_DN3311_c0_g1_i2.p1, TRINITY_DN176787_c0_g1_i1.p1
Chironomus riparius CRIPA g7561.t1
Chironomus columbiensis CCOLU TRINITY_DN11998_c0_g1_i2.p1
Chironomus tentans CTENT g2803.t1
Chironomus dilutus CDILU TRINITY_DN9034_c0_g1_i2.p1
Polypedilum nubifer PNUBI Pn.14874
Polypedilum vanderplanki PVAND g4800.t1
Polypedilum pembai PPEMB g14192.t1
Culicoides sonorensis CSONO none
Aedes aegypti lvpagwg AAEGYL none
Anopheles gambiae AGAMB none

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation