General information for g6043.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative ATP-binding cassette sub-family G member 4.
Parent gene
- The parent gene g6043 is located on chr_2: 13792336..13802633 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6043 | g6043.t2 | isoform | g6043.t2 | 13792336 | 13798264 |
| chr_2 | g6043 | g6043.t2 | exon | g6043.t2.exon1 | 13792336 | 13792455 |
| chr_2 | g6043 | g6043.t2 | cds | g6043.t2.CDS1 | 13792424 | 13792455 |
| chr_2 | g6043 | g6043.t2 | exon | g6043.t2.exon2 | 13792824 | 13793014 |
| chr_2 | g6043 | g6043.t2 | cds | g6043.t2.CDS2 | 13792824 | 13793014 |
| chr_2 | g6043 | g6043.t2 | exon | g6043.t2.exon3 | 13793853 | 13793903 |
| chr_2 | g6043 | g6043.t2 | cds | g6043.t2.CDS3 | 13793853 | 13793903 |
| chr_2 | g6043 | g6043.t2 | exon | g6043.t2.exon4 | 13793968 | 13794034 |
| chr_2 | g6043 | g6043.t2 | cds | g6043.t2.CDS4 | 13793968 | 13793972 |
| chr_2 | g6043 | g6043.t2 | exon | g6043.t2.exon5 | 13798121 | 13798264 |
| chr_2 | g6043 | g6043.t2 | TSS | g6043.t2 | NA | NA |
| chr_2 | g6043 | g6043.t2 | TTS | g6043.t2 | NA | NA |
Sequences
>g6043.t2 Gene=g6043 Length=573
GAAAAACCTGGTTGGAACATCATCGACAAAAAATACAAATTGTTCCAGCACAACCAAAGA
CATTGACACATTTACCATCAAGACCACCGGTTGAATTAGCCTTCAAGGATTTAACTTATC
GTGTTAAGGAAGGACGTTCTAATAATGTTAAAACAATTCTCAAAGAAGTTAGCGGTCGAT
TGCGACCAGGCGAGCTATGCGGAATTATGGGACCTTCAGGTGCAGGCAAATCGACTTTGC
TCAATATTCTCTCGGGATACAAGACGACAAAGATCGATGGATCGATAACGATGAATGGAA
AGGAACGCAACATCAGCGTATTCCGCAAACTTTCGGCTTACATCATGCAGGATAATCAAT
TGCATGCTAATCTCACTGTCGAGGAAGCAATGAATGTTGCATCGAACTTAAAATTGAGCC
AAAAAGTGTTGACGTGGCGAGAAAATGAATGTGATAAAAGAAATTTTAGAAACTCTTGGA
CTTGAAGAACATCGAAGAACTTTGACAAGAAATCTTTCAGGAGGTCAAAAGAAACGTTTA
TCAATTGCACTCGAATTGGTCAATAATCCACCG
>g6043.t2 Gene=g6043 Length=92
MGPSGAGKSTLLNILSGYKTTKIDGSITMNGKERNISVFRKLSAYIMQDNQLHANLTVEE
AMNVASNLKLSQKVLTWRENECDKRNFRNSWT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g6043.t2 | Gene3D | G3DSA:3.40.50.300 | - | 1 | 88 | 0 |
| 2 | g6043.t2 | PANTHER | PTHR48041 | ABC TRANSPORTER G FAMILY MEMBER 28 | 1 | 75 | 0 |
| 3 | g6043.t2 | PANTHER | PTHR48041:SF6 | PROTEIN WHITE-LIKE PROTEIN | 1 | 75 | 0 |
| 1 | g6043.t2 | Pfam | PF00005 | ABC transporter | 1 | 77 | 0 |
| 4 | g6043.t2 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1 | 80 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
