Gene loci information

Isoforms of this gene

  • There are 2 isoforms that are expressed from this gene.
  • The longest transcript is g6043.t1
  • List of isoforms

g6043.t1, g6043.t2

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

This gene did not have any KEGG Ortholog annotations (KAAS, GHOSTZ).

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g6043.t1) is OG0000031. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 9 XP_012063521.1, XP_012064186.1, XP_012062737.1, XP_012063520.1, XP_012064493.1, XP_012063523.1, XP_012064564.1, XP_012063408.1, XP_012062736.1
Apis mellifera AMELL 7 GB44771-PA, GB53043-PA, GB41616-PA, GB53045-PA, GB44772-PA, GB53046-PA, GB44751-PA
Culicoides sonorensis CSONO 4 CSON011372-1, CSON011370-1, CSON002675-2, CSON010477-1
Polypedilum nubifer PNUBI 9 Pn.11913, Pn.05833, Pn.15693, Pn.04052, Pn.02964, Pn.00864, Pn.09173, Pn.05834, Pn.15885
Polypedilum vanderplanki PVAND 12 g2524.t1, g14041.t1, g15452.t1, g1835.t1, g6043.t1, g6042.t1, g6040.t1, g2678.t1, g5011.t1, g2679.t1, g6039.t1, g10958.t1
Polypedilum pembai PPEMB 9 g10789.t1, g13635.t1, g1568.t1, g13634.t1, g14323.t1, g1924.t1, g12496.t1, g10991.t1, g1011.t1
Belgica antarctica BANTA 10 IU25_03060-mRNA-1, IU25_07929-mRNA-1, IU25_02046-mRNA-1, IU25_06625-mRNA-1, IU25_06628-mRNA-1, IU25_09187-mRNA-1, IU25_06629-mRNA-1, IU25_01479-mRNA-1, IU25_03061-mRNA-1, IU25_05112-mRNA-1
Clunio marinus CMARI 8 CRK90572.1, CRK94326.1, CRK94468.1, CRL06232.1, CRL06230.1, CRL02482.1, CRL00838.1, CRL06051.1
Aedes aegypti lvpagwg AAEGYL 10 AAEL008624-PC, AAEL008625-PA, AAEL008672-PB, AAEL008635-PB, AAEL008138-PB, AAEL026976-PA, AAEL008628-PB, AAEL008632-PA, AAEL019463-PA, AAEL019641-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 18 EDS33513.1, EDS30004.1, EDS38501.1, EDS38500.1, EDS38497.1, EDS38495.1, EDS38499.1, EDS40430.1, EDS38496.1, EDS38498.1, EDS30005.1, EDS38493.1, EDS27773.1, EDS43565.1, EDS38494.1, EDS42749.1, EDS29091.1, EDS30299.1
Culex quinquefasciatus CQUIN 18 CPIJ020198-PA, CPIJ012368-PA, CPIJ012371-PA, CPIJ012366-PA, CPIJ012370-PA, CPIJ018601-PA, CPIJ007191-PA, CPIJ012364-PA, CPIJ000553-PA, CPIJ001540-PA, CPIJ019125-PA, CPIJ004818-PA, CPIJ012369-PA, CPIJ014443-PA, CPIJ012365-PA, CPIJ007190-PA, CPIJ012367-PA, CPIJ012372-PA
Anopheles atroparvus AATRO 11 AATE002483-PA, AATE019394-PA, AATE003519-PA, AATE010916-PA, AATE011243-PA, AATE020194-PA, AATE007968-PA, AATE010511-PA, AATE019171-PA, AATE000269-PA, AATE014236-PA
Anopheles sinensis china ASINEC 9 ASIC008278-PA, ASIC014575-PA, ASIC007325-PA, ASIC002529-PA, ASIC007326-PA, ASIC010769-PA, ASIC007323-PA, ASIC007324-PA, ASIC007334-PA
Anopheles dirus ADIRU 7 ADIR006797-PA, ADIR006057-PA, ADIR002696-PA, ADIR006060-PA, ADIR006058-PA, ADIR011421-PA, ADIR005187-PA
Anopheles farauti AFARA 10 AFAF008676-PA, AFAF005290-PA, AFAF012995-PA, AFAF006240-PA, AFAF001359-PA, AFAF002021-PA, AFAF002523-PA, AFAF019198-PA, AFAF004396-PA, AFAF013061-PA
Anopheles epiroticus AEPIR 6 AEPI010894-PA, AEPI007395-PA, AEPI007860-PA, AEPI002849-PA, AEPI002417-PA, AEPI002852-PA
Anopheles christyi ACHRI 9 ACHR006924-PA, ACHR010225-PA, ACHR010053-PA, ACHR004913-PA, ACHR000429-PA, ACHR003769-PA, ACHR009173-PA, ACHR008236-PA, ACHR007999-PA
Anopheles merus AMERU 11 AMEM006574-PA, AMEM014560-PA, AMEM014997-PA, AMEM014990-PA, AMEM010679-PA, AMEM001305-PA, AMEM015139-PA, AMEM015901-PA, AMEM005535-PA, AMEM001455-PA, AMEM005729-PA
Anopheles melas AMELA 13 AMEC012847-PA, AMEC020752-PA, AMEC015789-PA, AMEC016563-PA, AMEC010347-PA, AMEC015455-PA, AMEC007971-PA, AMEC004946-PA, AMEC013136-PA, AMEC003011-PA, AMEC006277-PA, AMEC007704-PA, AMEC016882-PA
Anopheles arabiensis AARAB 11 AARA011910-PA, AARA016562-PA, AARA016362-PA, AARA016767-PB, AARA016561-PA, AARA018133-PB, AARA016559-PA, AARA009503-PA, AARA016560-PA, AARA018266-PA, AARA016558-PA
Anopheles coluzzii ACOLU 10 ACOM032349-PA, ACOM032339-PA, ACOM032350-PA, ACOM023734-PA, ACOM040737-PA, ACOM032345-PA, ACOM026790-PA, ACOM032346-PA, ACOM032347-PA, ACOM040618-PA
Anopheles coluzzii ngousso ACOLUN 11 ACON029451-PB, ACON008945-PA, ACON009467-PA, ACON028729-PA, ACON009471-PA, ACON009463-PA, ACON009472-PA, ACON008889-PA, ACON029500-PA, ACON009466-PA, ACON009468-PA
Anopheles gambiae AGAMB 11 AGAP029451-PA, AGAP009466-PA, AGAP028729-PA, AGAP009471-PA, AGAP009468-PA, AGAP008945-PA, AGAP009463-PA, AGAP009467-PA, AGAP008889-PA, AGAP029500-PA, AGAP009472-PA
Anopheles quadriannulatus AQUAD 7 AQUA007820-PA, AQUA007246-PA, AQUA011545-PA, AQUA008633-PA, AQUA004210-PA, AQUA008634-PA, AQUA008637-PA
Anopheles minimus AMINI 6 AMIN001846-PA, AMIN009389-PA, AMIN001655-PA, AMIN001844-PA, AMIN000431-PA, AMIN009574-PA
Anopheles culicifacies ACULI 9 ACUA027740-PA, ACUA024544-PA, ACUA013130-PA, ACUA026942-PA, ACUA020582-PA, ACUA016207-PA, ACUA027389-PA, ACUA003384-PA, ACUA009729-PA
Anopheles funestus AFUNE 10 AFUN015980-PA, AFUN020102-PA, AFUN003077-PA, AFUN005259-PA, AFUN015979-PA, AFUN015982-PA, AFUN015745-PA, AFUN010004-PA, AFUN015981-PA, AFUN015978-PA
Anopheles stephensi indian ASTEPI 7 ASTEI04963-PA, ASTEI01938-PA, ASTEI08760-PA, ASTEI07390-PA, ASTEI09638-PA, ASTEI06540-PA, ASTEI09637-PA
Anopheles stephensi ASTEP 6 ASTE007547-PA, ASTE009438-PA, ASTE009633-PA, ASTE007549-PA, ASTE005541-PA, ASTE009867-PA
Anopheles albimanus AALBI 9 AALB014164-PA, AALB001631-PA, AALB001634-PA, AALB001823-PA, AALB000627-PA, AALB002233-PA, AALB001630-PA, AALB000118-PA, AALB001553-PA
Anopheles darlingi ADARL 9 ADAC009956-PA, ADAC002749-PA, ADAC009967-PA, ADAC003957-PA, ADAC001103-PA, ADAC009965-PA, ADAC000160-PA, ADAC000157-PA, ADAC000161-PA
Drosophila willistoni DWILL 6 FBpp0253718, FBpp0378807, FBpp0378701, FBpp0378130, FBpp0243681, FBpp0374550
Drosophila pseudoobscura DPSEU 6 FBpp0339006, FBpp0334461, FBpp0287500, FBpp0287776, FBpp0287501, FBpp0280308
Drosophila persimilis DPERS 7 FBpp0190683, FBpp0180657, FBpp0190516, FBpp0178150, FBpp0190517, FBpp0183302, FBpp0180668
Drosophila ananassae DANAN 6 FBpp0117339, FBpp0348796, FBpp0350947, FBpp0118882, FBpp0117079, FBpp0118881
Drosophila melanogaster DMELA 6 FBpp0077812, FBpp0306278, FBpp0077292, FBpp0077291, FBpp0079489, FBpp0077116
Drosophila sechellia DSECH 6 FBpp0199633, FBpp0199835, FBpp0193569, FBpp0199632, FBpp0198177, FBpp0199940
Drosophila simulans DSIMU 6 FBpp0221168, FBpp0221679, FBpp0313274, FBpp0221390, FBpp0220723, FBpp0221169
Drosophila erecta DEREC 6 FBpp0369771, FBpp0142996, FBpp0143423, FBpp0142538, FBpp0143538, FBpp0142995
Drosophila yakuba DYAKU 6 FBpp0360766, FBpp0259923, FBpp0259919, FBpp0263184, FBpp0263290, FBpp0255147
Drosophila virilis DVIRI 6 FBpp0230641, FBpp0231793, FBpp0232140, FBpp0230621, FBpp0232723, FBpp0232139
Drosophila mojavensis DMOJA 5 FBpp0167168, FBpp0167093, FBpp0384858, FBpp0167169, FBpp0160224
Drosophila grimshawi DGRIM 6 FBpp0145070, FBpp0143974, FBpp0145555, FBpp0418129, FBpp0404454, FBpp0145556
Lucilia cuprina LCUPR 6 KNC33510, KNC31437, KNC20968, KNC20977, KNC29189, KNC29188
Musca domestica MDOME 6 MDOA011369-PA, MDOA014207-PA, MDOA000888-PA, MDOA010369-PB, MDOA001558-PA, MDOA000696-PA
Stomoxys calcitrans SCALC 6 SCAU010028-PA, SCAU006053-PA, SCAU007174-PA, SCAU006893-PA, SCAU005865-PA, SCAU009890-PA
Glossina brevipalpis GBREV 6 GBRI001886-PA, GBRI039121-PA, GBRI001908-PA, GBRI020010-PA, GBRI023036-PA, GBRI039124-PA
Glossina palpalis GPALP 6 GPPI046521-PA, GPPI046047-PA, GPPI022705-PA, GPPI022707-PA, GPPI019895-PA, GPPI019881-PA
Glossina austeni GAUST 8 GAUT029660-PA, GAUT009392-PA, GAUT034396-PA, GAUT029026-PA, GAUT009394-PA, GAUT009856-PA, GAUT045845-PA, GAUT009855-PA
Glossina pallidipes GPALL 6 GPAI016354-PA, GPAI047988-PA, GPAI040082-PA, GPAI016234-PA, GPAI006509-PA, GPAI016233-PA
Glossina morsitans GMORS 6 GMOY003689-PA, GMOY006639-PA, GMOY006745-PA, GMOY003688-PA, GMOY003117-PA, GMOY002225-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g6043.t1) is OG0001716. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN726_c0_g1_i12.p1, TRINITY_DN3140_c0_g1_i30.p1
Parochlus steinenii PSTEI PSG12679, PSG12678
Trissopelopia nemorum TNEMO TRINITY_DN6219_c0_g1_i2.p1, TRINITY_DN2075_c0_g2_i1.p1
Paraheptagyia tonnoiri PTONN TRINITY_DN2898_c0_g1_i19.p1, TRINITY_DN875_c0_g1_i5.p1
Telmatogeton pecinata TPECI TRINITY_DN345_c0_g1_i20.p1, TRINITY_DN2741_c0_g1_i2.p1, TRINITY_DN158_c0_g5_i1.p1
Cricotopus draysoni CDRAY TRINITY_DN32768_c0_g1_i1.p1, TRINITY_DN964_c0_g1_i1.p1, TRINITY_DN22738_c0_g1_i1.p1
Clunio marinus CMARI CRL00838.1
Cardiocladius sp CARDI TRINITY_DN571_c0_g1_i5.p1
Belgica antarctica BANTA IU25_03061-mRNA-1, IU25_03060-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN37446_c0_g1_i1.p2, TRINITY_DN314_c0_g1_i6.p1, TRINITY_DN2614_c0_g2_i3.p1, TRINITY_DN2614_c0_g1_i1.p1
Chironomus riparius CRIPA g15115.t1, g14180.t1
Chironomus columbiensis CCOLU TRINITY_DN1904_c0_g1_i2.p1, TRINITY_DN13701_c0_g1_i1.p1
Chironomus tentans CTENT g2865.t1, g2866.t1
Chironomus dilutus CDILU TRINITY_DN3843_c0_g1_i6.p1, TRINITY_DN915_c0_g1_i2.p1
Polypedilum nubifer PNUBI Pn.02964, Pn.00864
Polypedilum vanderplanki PVAND g6040.t1, g6039.t1, g6043.t1
Polypedilum pembai PPEMB g13635.t1, g13634.t1, g14323.t1
Culicoides sonorensis CSONO CSON002675-2
Aedes aegypti lvpagwg AAEGYL AAEL008672-PB, AAEL008138-PB
Anopheles gambiae AGAMB AGAP029451-PA, AGAP029500-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation