General information for g6220.t10
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Acyl-CoA-binding domain-containing protein 5.
Parent gene
- The parent gene g6220 is located on chr_2: 15306423..15306803 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6220 | g6220.t10 | TSS | g6220.t10 | 15302557 | 15302557 |
| chr_2 | g6220 | g6220.t10 | isoform | g6220.t10 | 15302805 | 15306423 |
| chr_2 | g6220 | g6220.t10 | exon | g6220.t10.exon1 | 15302805 | 15302840 |
| chr_2 | g6220 | g6220.t10 | exon | g6220.t10.exon2 | 15304627 | 15305069 |
| chr_2 | g6220 | g6220.t10 | cds | g6220.t10.CDS1 | 15304650 | 15305069 |
| chr_2 | g6220 | g6220.t10 | exon | g6220.t10.exon3 | 15305129 | 15305200 |
| chr_2 | g6220 | g6220.t10 | cds | g6220.t10.CDS2 | 15305129 | 15305200 |
| chr_2 | g6220 | g6220.t10 | exon | g6220.t10.exon4 | 15305256 | 15305393 |
| chr_2 | g6220 | g6220.t10 | cds | g6220.t10.CDS3 | 15305256 | 15305393 |
| chr_2 | g6220 | g6220.t10 | exon | g6220.t10.exon5 | 15306259 | 15306423 |
| chr_2 | g6220 | g6220.t10 | cds | g6220.t10.CDS4 | 15306259 | 15306423 |
| chr_2 | g6220 | g6220.t10 | TTS | g6220.t10 | 15306581 | 15306581 |
Sequences
>g6220.t10 Gene=g6220 Length=854
ATGTCGATTGAGGATAGATTTAATGCAGCTGTAAATGACCTTACCAACCTTCTTATGACA
TGATGCTTCGATTTTACTCATATTTTAAACAAAGCACAGAAGGACCTTGTAAGGGAAAAC
GACCTGCATTCTGGGATATTGTTGGTAAAGCAAAATATGATTCATGGAAGAGATTAGGTG
ATATGTCAAAAGAAAAGGCCATGGAGGCTTATGTGGATGAATTGAGAAAAATTGTAGAGA
CAATGTCATATACGCAGACTGTTGCTGAATTCTATGACTCACTAAATGAAATGGATAACG
TGAATGTATCTGATTTAGAGCTTGTTGCACCGGAATTGATGAGAAGTAAATCAGAATCCA
ATTCACCAGTTCATCAACATAGAGAGCCCATAAATGGAAATATTCAAAATGCATTTGCTG
GAAGCAGCGGAAATTCAGAAACATCAGATGATGATGAAGAGTACATTGATACTGTTGAGG
ATGAAATGCCAATTGAAAATATTGCCCGCCCTAGAGATTATTCGCACCAAAATGGAGGAG
TTCACAAAAAGAATATGCCAATGACTGAAGTGACGAATAAGTTAAATATTGATCAATCAC
TACGACATCAATTAGTTCAAAGTATAACAGACAACATGAAAGCCGATTTGCAGCAAGTCA
ACACGCGAATTAGTTCCCTTGAGCAAAAGATCGCAGCAAATGAACAGCGGCGACAATATC
CGAAATGGTGGCCTTTCAAAGAAGTATCACCATCATTTTTAACATTCACAATCATTTGGC
CGGTGGCTGTTGCAATTTTATTTCGGCTGATGCAAAAGAACAAATTGAATCATGGTGTCG
GAAAGCGTAGTTAA
>g6220.t10 Gene=g6220 Length=264
MMLRFYSYFKQSTEGPCKGKRPAFWDIVGKAKYDSWKRLGDMSKEKAMEAYVDELRKIVE
TMSYTQTVAEFYDSLNEMDNVNVSDLELVAPELMRSKSESNSPVHQHREPINGNIQNAFA
GSSGNSETSDDDEEYIDTVEDEMPIENIARPRDYSHQNGGVHKKNMPMTEVTNKLNIDQS
LRHQLVQSITDNMKADLQQVNTRISSLEQKIAANEQRRQYPKWWPFKEVSPSFLTFTIIW
PVAVAILFRLMQKNKLNHGVGKRS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g6220.t10 | Coils | Coil | Coil | 190 | 217 | - |
| 5 | g6220.t10 | Gene3D | G3DSA:1.20.80.10 | - | 1 | 70 | 5.5E-27 |
| 2 | g6220.t10 | PANTHER | PTHR23310:SF77 | LD25952P | 1 | 218 | 1.5E-37 |
| 3 | g6220.t10 | PANTHER | PTHR23310 | ACYL-COA-BINDING PROTEIN, ACBP | 1 | 218 | 1.5E-37 |
| 1 | g6220.t10 | Pfam | PF00887 | Acyl CoA binding protein | 2 | 59 | 1.0E-19 |
| 8 | g6220.t10 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 228 | - |
| 9 | g6220.t10 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 229 | 248 | - |
| 7 | g6220.t10 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 249 | 264 | - |
| 11 | g6220.t10 | ProSiteProfiles | PS51228 | Acyl-CoA-binding (ACB) domain profile. | 1 | 64 | 36.214 |
| 4 | g6220.t10 | SUPERFAMILY | SSF47027 | Acyl-CoA binding protein | 2 | 61 | 9.02E-22 |
| 10 | g6220.t10 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 229 | 251 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0000062 | fatty-acyl-CoA binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
