Gene loci information

Isoforms of this gene

  • There are 33 isoforms that are expressed from this gene.
  • The longest transcript is g6220.t1
  • List of isoforms

g6220.t1, g6220.t3, g6220.t4, g6220.t5, g6220.t6, g6220.t7, g6220.t8, g6220.t9, g6220.t10, g6220.t11, g6220.t12, g6220.t13, g6220.t14, g6220.t15, g6220.t16, g6220.t17, g6220.t18, g6220.t19, g6220.t20, g6220.t21, g6220.t22, g6220.t23, g6220.t24, g6220.t25, g6220.t26, g6220.t27, g6220.t28, g6220.t29, g6220.t30, g6220.t31, g6220.t32, g6220.t33, g6220.t34

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

This gene did not have any KEGG Ortholog annotations (KAAS, GHOSTZ).

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g6220.t1) is OG0000115. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 4 XP_012063906.1, XP_012064219.1, XP_012061524.1, XP_012064227.1
Apis mellifera AMELL 3 GB51463-PA, GB54208-PA, GB41818-PA
Culicoides sonorensis CSONO 4 CSON009252-1, CSON008872-1, CSON014941-1, CSON001580-1
Polypedilum nubifer PNUBI 3 Pn.06581, Pn.16086, Pn.10776
Polypedilum vanderplanki PVAND 3 g13373.t1, g6220.t1, g13846.t1
Polypedilum pembai PPEMB 3 g6758.t1, g9880.t1, g10469.t1
Belgica antarctica BANTA 3 IU25_07527-mRNA-1, IU25_03279-mRNA-1, IU25_00174-mRNA-1
Clunio marinus CMARI 3 CRL04770.1, CRL04238.1, CRK96362.1
Aedes aegypti lvpagwg AAEGYL 5 AAEL009214-PA, AAEL029037-PA, AAEL013844-PB, AAEL006189-PA, AAEL026177-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 4 EDS40234.1, EDS38964.1, EDS36473.1, EDS31394.1
Culex quinquefasciatus CQUIN 4 CPIJ011388-PA, CPIJ008477-PA, CPIJ013632-PA, CPIJ003820-PA
Anopheles atroparvus AATRO 1 AATE010983-PA
Anopheles sinensis china ASINEC 4 ASIC019767-PA, ASIC010256-PA, ASIC015152-PA, ASIC015141-PA
Anopheles dirus ADIRU 1 ADIR004634-PA
Anopheles farauti AFARA 3 AFAF017076-PA, AFAF018855-PA, AFAF001185-PA
Anopheles epiroticus AEPIR 2 AEPI003016-PA, AEPI002658-PA
Anopheles christyi ACHRI 3 ACHR001575-PA, ACHR008171-PA, ACHR006113-PA
Anopheles merus AMERU 1 AMEM003681-PA
Anopheles melas AMELA 2 AMEC008344-PA, AMEC004409-PA
Anopheles arabiensis AARAB 4 AARA017384-PA, AARA016477-PA, AARA010500-PA, AARA010241-PA
Anopheles coluzzii ACOLU 2 ACOM042693-PA, ACOM025698-PA
Anopheles coluzzii ngousso ACOLUN 4 ACON004489-PA, ACON000752-PA, ACON007460-PA, ACON000546-PA
Anopheles gambiae AGAMB 4 AGAP000546-PA, AGAP004489-PA, AGAP007460-PA, AGAP000752-PA
Anopheles quadriannulatus AQUAD 3 AQUA008273-PA, AQUA010826-PA, AQUA017247-PA
Anopheles minimus AMINI 2 AMIN005147-PA, AMIN005299-PA
Anopheles culicifacies ACULI 2 ACUA005922-PA, ACUA022973-PA
Anopheles funestus AFUNE 4 AFUN003546-PA, AFUN022333-PA, AFUN020025-PA, AFUN022022-PA
Anopheles stephensi indian ASTEPI 3 ASTEI09821-PA, ASTEI01388-PA, ASTEI00992-PA
Anopheles stephensi ASTEP 2 ASTE007720-PA, ASTE010549-PA
Anopheles albimanus AALBI 2 AALB007676-PA, AALB006735-PA
Anopheles darlingi ADARL 3 ADAC009698-PA, ADAC004239-PA, ADAC002291-PA
Drosophila willistoni DWILL 8 FBpp0246681, FBpp0245795, FBpp0245454, FBpp0252886, FBpp0248429, FBpp0245796, FBpp0248428, FBpp0253427
Drosophila pseudoobscura DPSEU 8 FBpp0274961, FBpp0274642, FBpp0273675, FBpp0274639, FBpp0287151, FBpp0280445, FBpp0287395, FBpp0274640
Drosophila persimilis DPERS 8 FBpp0180680, FBpp0189134, FBpp0189133, FBpp0189136, FBpp0190399, FBpp0183428, FBpp0174387, FBpp0189249
Drosophila ananassae DANAN 8 FBpp0127983, FBpp0128202, FBpp0113339, FBpp0128201, FBpp0125036, FBpp0128203, FBpp0117600, FBpp0118181
Drosophila melanogaster DMELA 8 FBpp0079256, FBpp0076623, FBpp0076622, FBpp0076624, FBpp0076922, FBpp0077314, FBpp0076318, FBpp0076634
Drosophila sechellia DSECH 8 FBpp0204107, FBpp0195265, FBpp0196299, FBpp0199853, FBpp0194636, FBpp0196297, FBpp0196298, FBpp0206393
Drosophila simulans DSIMU 8 FBpp0322716, FBpp0212397, FBpp0212395, FBpp0211365, FBpp0221593, FBpp0212396, FBpp0220839, FBpp0213903
Drosophila erecta DEREC 8 FBpp0142019, FBpp0133543, FBpp0143442, FBpp0132952, FBpp0136092, FBpp0132950, FBpp0133606, FBpp0132951
Drosophila yakuba DYAKU 8 FBpp0266604, FBpp0266605, FBpp0263199, FBpp0266606, FBpp0256179, FBpp0260316, FBpp0265453, FBpp0266293
Drosophila virilis DVIRI 8 FBpp0226715, FBpp0232739, FBpp0226716, FBpp0233199, FBpp0227733, FBpp0226477, FBpp0226478, FBpp0238687
Drosophila mojavensis DMOJA 6 FBpp0162512, FBpp0166219, FBpp0384131, FBpp0163661, FBpp0162511, FBpp0160377
Drosophila grimshawi DGRIM 10 FBpp0150948, FBpp0145412, FBpp0148423, FBpp0148422, FBpp0146796, FBpp0148424, FBpp0144590, FBpp0147800, FBpp0404722, FBpp0150045
Lucilia cuprina LCUPR 7 KNC26886, KNC33113, KNC29865, KNC29882, KNC29863, KNC25833, KNC26663
Musca domestica MDOME 14 MDOA007810-PA, MDOA006484-PA, MDOA008150-PA, MDOA003165-PA, MDOA000144-PA, MDOA015334-PA, MDOA000761-PA, MDOA005097-PA, MDOA007517-PA, MDOA006725-PA, MDOA004137-PA, MDOA010739-PA, MDOA006665-PA, MDOA003166-PA
Stomoxys calcitrans SCALC 11 SCAU002294-PA, SCAU011892-PA, SCAU011115-PA, SCAU008360-PA, SCAU015273-PA, SCAU001707-PA, SCAU009014-PA, SCAU016256-PA, SCAU013710-PA, SCAU008838-PA, SCAU008890-PA
Glossina brevipalpis GBREV 5 GBRI027539-PA, GBRI007081-PA, GBRI042697-PA, GBRI005047-PA, GBRI012490-PA
Glossina palpalis GPALP 5 GPPI021914-PA, GPPI018260-PA, GPPI035280-PA, GPPI000453-PA, GPPI023235-PA
Glossina austeni GAUST 4 GAUT023958-PA, GAUT001761-PA, GAUT004721-PA, GAUT033581-PA
Glossina pallidipes GPALL 3 GPAI032833-PA, GPAI013328-PA, GPAI012836-PA
Glossina morsitans GMORS 3 GMOY007571-PA, GMOY010285-PA, GMOY004439-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g6220.t1) is OG0003328. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN2253_c0_g1_i4.p1
Parochlus steinenii PSTEI PSG09441
Trissopelopia nemorum TNEMO TRINITY_DN19875_c0_g1_i1.p1
Paraheptagyia tonnoiri PTONN TRINITY_DN768_c0_g1_i6.p1
Telmatogeton pecinata TPECI TRINITY_DN0_c733_g2_i2.p2, TRINITY_DN31900_c1_g1_i1.p1, TRINITY_DN31900_c0_g1_i1.p2, TRINITY_DN7_c0_g5_i1.p1
Cricotopus draysoni CDRAY TRINITY_DN15398_c0_g1_i1.p1
Clunio marinus CMARI CRK96362.1
Cardiocladius sp CARDI TRINITY_DN1356_c0_g1_i4.p1
Belgica antarctica BANTA IU25_03279-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN17281_c1_g1_i1.p2, TRINITY_DN17281_c0_g1_i1.p1, TRINITY_DN272209_c0_g1_i1.p1, TRINITY_DN3622_c0_g1_i6.p1, TRINITY_DN3622_c7_g1_i1.p1, TRINITY_DN17281_c1_g2_i1.p3, TRINITY_DN17180_c0_g1_i2.p1, TRINITY_DN3622_c7_g2_i1.p1
Chironomus riparius CRIPA g17927.t1
Chironomus columbiensis CCOLU TRINITY_DN2030_c0_g1_i2.p1
Chironomus tentans CTENT g15614.t1, g16066.t1
Chironomus dilutus CDILU TRINITY_DN19632_c0_g1_i1.p1
Polypedilum nubifer PNUBI Pn.16086
Polypedilum vanderplanki PVAND g6220.t1
Polypedilum pembai PPEMB g10469.t1
Culicoides sonorensis CSONO CSON009252-1, CSON008872-1
Aedes aegypti lvpagwg AAEGYL AAEL006189-PA
Anopheles gambiae AGAMB AGAP004489-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation