Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Acyl-CoA-binding domain-containing protein 5.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6220 g6220.t28 TSS g6220.t28 15302557 15302557
chr_2 g6220 g6220.t28 isoform g6220.t28 15304650 15306803
chr_2 g6220 g6220.t28 exon g6220.t28.exon1 15304650 15305069
chr_2 g6220 g6220.t28 cds g6220.t28.CDS1 15304650 15305069
chr_2 g6220 g6220.t28 exon g6220.t28.exon2 15305129 15305204
chr_2 g6220 g6220.t28 cds g6220.t28.CDS2 15305129 15305204
chr_2 g6220 g6220.t28 exon g6220.t28.exon3 15305256 15305393
chr_2 g6220 g6220.t28 cds g6220.t28.CDS3 15305256 15305272
chr_2 g6220 g6220.t28 exon g6220.t28.exon4 15306259 15306803
chr_2 g6220 g6220.t28 TTS g6220.t28 NA NA

Sequences

>g6220.t28 Gene=g6220 Length=1179
ATGATGCTTCGATTTTACTCATATTTTAAACAAAGCACAGAAGGACCTTGTAAGGGAAAA
CGACCTGCATTCTGGGATATTGTTGGTAAAGCAAAATATGATTCATGGAAGAGATTAGGT
GATATGTCAAAAGAAAAGGCCATGGAGGCTTATGTGGATGAATTGAGAAAAATTGTAGAG
ACAATGTCATATACGCAGACTGTTGCTGAATTCTATGACTCACTAAATGAAATGGATAAC
GTGAATGTATCTGATTTAGAGCTTGTTGCACCGGAATTGATGAGAAGTAAATCAGAATCC
AATTCACCAGTTCATCAACATAGAGAGCCCATAAATGGAAATATTCAAAATGCATTTGCT
GGAAGCAGCGGAAATTCAGAAACATCAGATGATGATGAAGAGTACATTGATACTGTTGAG
GATGAAATGCCAATTGAAAATATTGCCCGCCCTAGAGATTATTCGCACCAAAATGGAGGA
GTTCACAAAAAGGTTCAATATGCCAATGACTGAAGTGACGAATAAGTTAAATATTGATCA
ATCACTACGACATCAATTAGTTCAAAGTATAACAGACAACATGAAAGCCGATTTGCAGCA
AGTCAACACGCGAATTAGTTCCCTTGAGCAAAAGATCGCAGCAAATGAACAGCGGCGACA
ATATCCGAAATGGTGGCCTTTCAAAGAAGTATCACCATCATTTTTAACATTCACAATCAT
TTGGCCGGTGGCTGTTGCAATTTTATTTCGGCTGATGCAAAAGAACAAATTGAATCATGG
TGTCGGAAAGCGTAGTTAATTTGATATTTTATGATGTTGACAGTTTTTTTTATTATCATT
TGTGGAGGGTGTGAGGTTTAAATGTGCAATGAATATTGGTCTATGCATAGGTAGCATATG
AAACTCAATACAACTTTTCAATGTTACTGAAAAAGTTATTTTTTATTGAGTATTTTTCAA
AAAAAAAAAAAAACATTCCCGCAACTGCAATTGGCTTCAATGAAATTGTGAATTTATACA
TGCGAGTTTTTCAAGTTTTTCGCTCTCTTGTTATTATTATTTTCGGAATGGATATTAAAA
AAGTTTTTAAACGGTGTACTACTTCTACTTTTAACCAAAACCAATATTTATGTACTTTTA
TGCAATTTTGACAATTAAACGACATGTTAATTATAAAAT

>g6220.t28 Gene=g6220 Length=170
MMLRFYSYFKQSTEGPCKGKRPAFWDIVGKAKYDSWKRLGDMSKEKAMEAYVDELRKIVE
TMSYTQTVAEFYDSLNEMDNVNVSDLELVAPELMRSKSESNSPVHQHREPINGNIQNAFA
GSSGNSETSDDDEEYIDTVEDEMPIENIARPRDYSHQNGGVHKKVQYAND

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g6220.t28 Gene3D G3DSA:1.20.80.10 - 1 70 2.3E-27
5 g6220.t28 MobiDBLite mobidb-lite consensus disorder prediction 119 170 -
6 g6220.t28 MobiDBLite mobidb-lite consensus disorder prediction 127 141 -
2 g6220.t28 PANTHER PTHR23310:SF77 LD25952P 1 138 1.0E-37
3 g6220.t28 PANTHER PTHR23310 ACYL-COA-BINDING PROTEIN, ACBP 1 138 1.0E-37
1 g6220.t28 Pfam PF00887 Acyl CoA binding protein 2 59 4.6E-20
8 g6220.t28 ProSiteProfiles PS51228 Acyl-CoA-binding (ACB) domain profile. 1 64 36.214
4 g6220.t28 SUPERFAMILY SSF47027 Acyl-CoA binding protein 2 61 3.79E-22

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0000062 fatty-acyl-CoA binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed