Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Acyl-CoA-binding domain-containing protein 5A.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6220 g6220.t12 TSS g6220.t12 15302557 15302557
chr_2 g6220 g6220.t12 isoform g6220.t12 15302805 15306423
chr_2 g6220 g6220.t12 exon g6220.t12.exon1 15302805 15302865
chr_2 g6220 g6220.t12 cds g6220.t12.CDS1 15302805 15302865
chr_2 g6220 g6220.t12 exon g6220.t12.exon2 15304627 15305069
chr_2 g6220 g6220.t12 cds g6220.t12.CDS2 15304627 15305069
chr_2 g6220 g6220.t12 exon g6220.t12.exon3 15305129 15305200
chr_2 g6220 g6220.t12 cds g6220.t12.CDS3 15305129 15305200
chr_2 g6220 g6220.t12 exon g6220.t12.exon4 15305256 15305391
chr_2 g6220 g6220.t12 cds g6220.t12.CDS4 15305256 15305391
chr_2 g6220 g6220.t12 exon g6220.t12.exon5 15306259 15306423
chr_2 g6220 g6220.t12 cds g6220.t12.CDS5 15306259 15306272
chr_2 g6220 g6220.t12 TTS g6220.t12 15306581 15306581

Sequences

>g6220.t12 Gene=g6220 Length=877
ATGTCGATTGAGGATAGATTTAATGCAGCTGTAAATGTAATACGCGGCTTACCCGCTAAA
GGACCTTACCAACCTTCTTATGACATGATGCTTCGATTTTACTCATATTTTAAACAAAGC
ACAGAAGGACCTTGTAAGGGAAAACGACCTGCATTCTGGGATATTGTTGGTAAAGCAAAA
TATGATTCATGGAAGAGATTAGGTGATATGTCAAAAGAAAAGGCCATGGAGGCTTATGTG
GATGAATTGAGAAAAATTGTAGAGACAATGTCATATACGCAGACTGTTGCTGAATTCTAT
GACTCACTAAATGAAATGGATAACGTGAATGTATCTGATTTAGAGCTTGTTGCACCGGAA
TTGATGAGAAGTAAATCAGAATCCAATTCACCAGTTCATCAACATAGAGAGCCCATAAAT
GGAAATATTCAAAATGCATTTGCTGGAAGCAGCGGAAATTCAGAAACATCAGATGATGAT
GAAGAGTACATTGATACTGTTGAGGATGAAATGCCAATTGAAAATATTGCCCGCCCTAGA
GATTATTCGCACCAAAATGGAGGAGTTCACAAAAAGAATATGCCAATGACTGAAGTGACG
AATAAGTTAAATATTGATCAATCACTACGACATCAATTAGTTCAAAGTATAACAGACAAC
ATGAAAGCCGATTTGCAGCAAGTCAACACGCGAATTAGTTCCCTTGAGCAAAATCGCAGC
AAATGAACAGCGGCGACAATATCCGAAATGGTGGCCTTTCAAAGAAGTATCACCATCATT
TTTAACATTCACAATCATTTGGCCGGTGGCTGTTGCAATTTTATTTCGGCTGATGCAAAA
GAACAAATTGAATCATGGTGTCGGAAAGCGTAGTTAA

>g6220.t12 Gene=g6220 Length=241
MSIEDRFNAAVNVIRGLPAKGPYQPSYDMMLRFYSYFKQSTEGPCKGKRPAFWDIVGKAK
YDSWKRLGDMSKEKAMEAYVDELRKIVETMSYTQTVAEFYDSLNEMDNVNVSDLELVAPE
LMRSKSESNSPVHQHREPINGNIQNAFAGSSGNSETSDDDEEYIDTVEDEMPIENIARPR
DYSHQNGGVHKKNMPMTEVTNKLNIDQSLRHQLVQSITDNMKADLQQVNTRISSLEQNRS
K

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g6220.t12 Coils Coil Coil 218 238 -
9 g6220.t12 Gene3D G3DSA:1.20.80.10 - 2 98 1.4E-37
2 g6220.t12 PANTHER PTHR23310:SF77 LD25952P 4 237 1.9E-51
3 g6220.t12 PANTHER PTHR23310 ACYL-COA-BINDING PROTEIN, ACBP 4 237 1.9E-51
6 g6220.t12 PRINTS PR00689 Acyl-coA-binding protein signature 4 19 3.9E-14
7 g6220.t12 PRINTS PR00689 Acyl-coA-binding protein signature 25 43 3.9E-14
5 g6220.t12 PRINTS PR00689 Acyl-coA-binding protein signature 48 63 3.9E-14
4 g6220.t12 PRINTS PR00689 Acyl-coA-binding protein signature 69 86 3.9E-14
1 g6220.t12 Pfam PF00887 Acyl CoA binding protein 4 87 5.4E-25
11 g6220.t12 ProSitePatterns PS00880 Acyl-CoA-binding (ACB) domain signature. 25 43 -
12 g6220.t12 ProSiteProfiles PS51228 Acyl-CoA-binding (ACB) domain profile. 3 92 43.968
8 g6220.t12 SUPERFAMILY SSF47027 Acyl-CoA binding protein 2 89 1.96E-28

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0000062 fatty-acyl-CoA binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed