General information for g6220.t25
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g6220 is located on chr_2: 15306423..15306803 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6220 | g6220.t25 | TSS | g6220.t25 | 15302557 | 15302557 |
| chr_2 | g6220 | g6220.t25 | isoform | g6220.t25 | 15302805 | 15306803 |
| chr_2 | g6220 | g6220.t25 | exon | g6220.t25.exon1 | 15302805 | 15302865 |
| chr_2 | g6220 | g6220.t25 | exon | g6220.t25.exon2 | 15304685 | 15305069 |
| chr_2 | g6220 | g6220.t25 | cds | g6220.t25.CDS1 | 15304773 | 15305069 |
| chr_2 | g6220 | g6220.t25 | exon | g6220.t25.exon3 | 15305129 | 15305200 |
| chr_2 | g6220 | g6220.t25 | cds | g6220.t25.CDS2 | 15305129 | 15305200 |
| chr_2 | g6220 | g6220.t25 | exon | g6220.t25.exon4 | 15305256 | 15305397 |
| chr_2 | g6220 | g6220.t25 | cds | g6220.t25.CDS3 | 15305256 | 15305397 |
| chr_2 | g6220 | g6220.t25 | exon | g6220.t25.exon5 | 15306259 | 15306803 |
| chr_2 | g6220 | g6220.t25 | cds | g6220.t25.CDS4 | 15306259 | 15306272 |
| chr_2 | g6220 | g6220.t25 | TTS | g6220.t25 | 15306581 | 15306581 |
Sequences
>g6220.t25 Gene=g6220 Length=1205
ATGTCGATTGAGGATAGATTTAATGCAGCTGTAAATGTAATACGCGGCTTACCCGCTAAA
GCACAGAAGGACCTTGTAAGGGAAAACGACCTGCATTCTGGGATATTGTTGGTAAAGCAA
AATATGATTCATGGAAGAGATTAGGTGATATGTCAAAAGAAAAGGCCATGGAGGCTTATG
TGGATGAATTGAGAAAAATTGTAGAGACAATGTCATATACGCAGACTGTTGCTGAATTCT
ATGACTCACTAAATGAAATGGATAACGTGAATGTATCTGATTTAGAGCTTGTTGCACCGG
AATTGATGAGAAGTAAATCAGAATCCAATTCACCAGTTCATCAACATAGAGAGCCCATAA
ATGGAAATATTCAAAATGCATTTGCTGGAAGCAGCGGAAATTCAGAAACATCAGATGATG
ATGAAGAGTACATTGATACTGTTGAGGATGAAATGCCAATTGAAAATATTGCCCGCCCTA
GAGATTATTCGCACCAAAATGGAGGAGTTCACAAAAAGAATATGCCAATGACTGAAGTGA
CGAATAAGTTAAATATTGATCAATCACTACGACATCAATTAGTTCAAAGTATAACAGACA
ACATGAAAGCCGATTTGCAGCAAGTCAACACGCGAATTAGTTCCCTTGAGCAAAAGGCAA
ATCGCAGCAAATGAACAGCGGCGACAATATCCGAAATGGTGGCCTTTCAAAGAAGTATCA
CCATCATTTTTAACATTCACAATCATTTGGCCGGTGGCTGTTGCAATTTTATTTCGGCTG
ATGCAAAAGAACAAATTGAATCATGGTGTCGGAAAGCGTAGTTAATTTGATATTTTATGA
TGTTGACAGTTTTTTTTATTATCATTTGTGGAGGGTGTGAGGTTTAAATGTGCAATGAAT
ATTGGTCTATGCATAGGTAGCATATGAAACTCAATACAACTTTTCAATGTTACTGAAAAA
GTTATTTTTTATTGAGTATTTTTCAAAAAAAAAAAAAAACATTCCCGCAACTGCAATTGG
CTTCAATGAAATTGTGAATTTATACATGCGAGTTTTTCAAGTTTTTCGCTCTCTTGTTAT
TATTATTTTCGGAATGGATATTAAAAAAGTTTTTAAACGGTGTACTACTTCTACTTTTAA
CCAAAACCAATATTTATGTACTTTTATGCAATTTTGACAATTAAACGACATGTTAATTAT
AAAAT
>g6220.t25 Gene=g6220 Length=174
MSKEKAMEAYVDELRKIVETMSYTQTVAEFYDSLNEMDNVNVSDLELVAPELMRSKSESN
SPVHQHREPINGNIQNAFAGSSGNSETSDDDEEYIDTVEDEMPIENIARPRDYSHQNGGV
HKKNMPMTEVTNKLNIDQSLRHQLVQSITDNMKADLQQVNTRISSLEQKANRSK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g6220.t25 | Coils | Coil | Coil | 149 | 174 | - |
| g6220.t25 | ProSiteProfiles | PS51228 | Acyl-CoA-binding (ACB) domain profile. | 1 | 23 | 12.069 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0000062 | fatty-acyl-CoA binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed