Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Acyl-CoA-binding domain-containing protein 5.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6220 g6220.t19 TSS g6220.t19 15302557 15302557
chr_2 g6220 g6220.t19 isoform g6220.t19 15302805 15306423
chr_2 g6220 g6220.t19 exon g6220.t19.exon1 15302805 15302834
chr_2 g6220 g6220.t19 exon g6220.t19.exon2 15304609 15305069
chr_2 g6220 g6220.t19 cds g6220.t19.CDS1 15304650 15305069
chr_2 g6220 g6220.t19 exon g6220.t19.exon3 15305129 15305200
chr_2 g6220 g6220.t19 cds g6220.t19.CDS2 15305129 15305200
chr_2 g6220 g6220.t19 exon g6220.t19.exon4 15305256 15305393
chr_2 g6220 g6220.t19 cds g6220.t19.CDS3 15305256 15305393
chr_2 g6220 g6220.t19 exon g6220.t19.exon5 15306259 15306423
chr_2 g6220 g6220.t19 cds g6220.t19.CDS4 15306259 15306423
chr_2 g6220 g6220.t19 TTS g6220.t19 15306581 15306581

Sequences

>g6220.t19 Gene=g6220 Length=866
ATGTCGATTGAGGATAGATTTAATGCAGCTGTTCTACATATTTTCTAGGACCTTACCAAC
CTTCTTATGACATGATGCTTCGATTTTACTCATATTTTAAACAAAGCACAGAAGGACCTT
GTAAGGGAAAACGACCTGCATTCTGGGATATTGTTGGTAAAGCAAAATATGATTCATGGA
AGAGATTAGGTGATATGTCAAAAGAAAAGGCCATGGAGGCTTATGTGGATGAATTGAGAA
AAATTGTAGAGACAATGTCATATACGCAGACTGTTGCTGAATTCTATGACTCACTAAATG
AAATGGATAACGTGAATGTATCTGATTTAGAGCTTGTTGCACCGGAATTGATGAGAAGTA
AATCAGAATCCAATTCACCAGTTCATCAACATAGAGAGCCCATAAATGGAAATATTCAAA
ATGCATTTGCTGGAAGCAGCGGAAATTCAGAAACATCAGATGATGATGAAGAGTACATTG
ATACTGTTGAGGATGAAATGCCAATTGAAAATATTGCCCGCCCTAGAGATTATTCGCACC
AAAATGGAGGAGTTCACAAAAAGAATATGCCAATGACTGAAGTGACGAATAAGTTAAATA
TTGATCAATCACTACGACATCAATTAGTTCAAAGTATAACAGACAACATGAAAGCCGATT
TGCAGCAAGTCAACACGCGAATTAGTTCCCTTGAGCAAAAGATCGCAGCAAATGAACAGC
GGCGACAATATCCGAAATGGTGGCCTTTCAAAGAAGTATCACCATCATTTTTAACATTCA
CAATCATTTGGCCGGTGGCTGTTGCAATTTTATTTCGGCTGATGCAAAAGAACAAATTGA
ATCATGGTGTCGGAAAGCGTAGTTAA

>g6220.t19 Gene=g6220 Length=264
MMLRFYSYFKQSTEGPCKGKRPAFWDIVGKAKYDSWKRLGDMSKEKAMEAYVDELRKIVE
TMSYTQTVAEFYDSLNEMDNVNVSDLELVAPELMRSKSESNSPVHQHREPINGNIQNAFA
GSSGNSETSDDDEEYIDTVEDEMPIENIARPRDYSHQNGGVHKKNMPMTEVTNKLNIDQS
LRHQLVQSITDNMKADLQQVNTRISSLEQKIAANEQRRQYPKWWPFKEVSPSFLTFTIIW
PVAVAILFRLMQKNKLNHGVGKRS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g6220.t19 Coils Coil Coil 190 217 -
5 g6220.t19 Gene3D G3DSA:1.20.80.10 - 1 70 5.5E-27
2 g6220.t19 PANTHER PTHR23310:SF77 LD25952P 1 218 1.5E-37
3 g6220.t19 PANTHER PTHR23310 ACYL-COA-BINDING PROTEIN, ACBP 1 218 1.5E-37
1 g6220.t19 Pfam PF00887 Acyl CoA binding protein 2 59 1.0E-19
8 g6220.t19 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 228 -
9 g6220.t19 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 229 248 -
7 g6220.t19 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 249 264 -
11 g6220.t19 ProSiteProfiles PS51228 Acyl-CoA-binding (ACB) domain profile. 1 64 36.214
4 g6220.t19 SUPERFAMILY SSF47027 Acyl-CoA binding protein 2 61 9.02E-22
10 g6220.t19 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 229 251 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0000062 fatty-acyl-CoA binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values