Gene loci information

Transcript annotation

  • This transcript has been annotated as Heat shock 70 kDa protein cognate 2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g945 g945.t2 TTS g945.t2 6999959 6999959
chr_3 g945 g945.t2 isoform g945.t2 7000043 7000949
chr_3 g945 g945.t2 exon g945.t2.exon1 7000043 7000949
chr_3 g945 g945.t2 cds g945.t2.CDS1 7000043 7000891
chr_3 g945 g945.t2 TSS g945.t2 NA NA

Sequences

>g945.t2 Gene=g945 Length=907
ACAGATTAATGAAGTAGTCTTAGTTGGTGGATCAACTCGAATTCCTAAAGTTCAAAAAAT
GTTGCAAGATTTCTTTGGGGGAAAAGCTTTAAATTTTTCAATTAATCCTGATGAAGCAGT
TGCCTATGGTGCAGCAATTCAAGCGGCTATTCTCACAGGAGATACAAGTTCACAAATTCA
AGATGTTTTGCTTGTTGATGTCACTCCATTATCACTTGGAATTGAAACAGCTGGTGGAGT
GATGAGCAAACTTGTTGAGAGAAATTCAAGAATTCCATGCAAACAGCAACAAACTTTTAC
TACTTATTCTGACAATCAAAATGCTGTTACAATTCAAGTATTTGAAGGTGAAAGAGCAAT
GACTAAAGATAATAATTTGCTTGGTACTTTCAATCTCACTGGAATTGCACCCGCACCACG
TGGAATACCGAAAATTGAAGTCACATTTGATCTCGATGCAAATGGAATTCTGAATGTTTC
AGCTAAAGATATATCAACTGGTAAACAGGAAAAAATCACAATAAAGAATGACAAAGGTCG
CCTGTCAAAAGCTGAAATCGATCGTATGCTCGCAGATGCTGAAAAGTATCGTGAAGAAGA
TGAGAAACAACAGAAACGAATCCAAGCACGCAATCAATTTGAAAGTTATATTTTCGGATG
CAAACAGGCAGTTGAGGAAGCACCTGCCGGAAGAATAACTGAAGAAGATAAAAAGATTGT
TCGAGACAAATGTGCTTCAGAACTGTCATGGCTTGATTCAAACACTCTTGCTGAAAAGGA
AGAATTTGAGGATCGTATGAAGGAAACTCAAAAAATTTGTGGACCAATTATGGCCAAAAT
TCATCAACAAGGCGCAAATGGTCAACAGCAATCATCAGGCAAACCAACTGTTGAAGAAGT
TGATTAA

>g945.t2 Gene=g945 Length=282
MLQDFFGGKALNFSINPDEAVAYGAAIQAAILTGDTSSQIQDVLLVDVTPLSLGIETAGG
VMSKLVERNSRIPCKQQQTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIAPAP
RGIPKIEVTFDLDANGILNVSAKDISTGKQEKITIKNDKGRLSKAEIDRMLADAEKYREE
DEKQQKRIQARNQFESYIFGCKQAVEEAPAGRITEEDKKIVRDKCASELSWLDSNTLAEK
EEFEDRMKETQKICGPIMAKIHQQGANGQQQSSGKPTVEEVD

Protein features from InterProScan

Transcript Database ID Name Start End E.value
16 g945.t2 Coils Coil Coil 167 191 -
14 g945.t2 Gene3D G3DSA:3.30.420.40 - 1 17 1.1E-6
13 g945.t2 Gene3D G3DSA:3.30.420.40 - 18 30 1.1E-6
12 g945.t2 Gene3D G3DSA:2.60.34.10 Substrate Binding Domain Of DNAk; Chain A 33 161 2.0E-61
15 g945.t2 Gene3D G3DSA:1.20.1270.10 - 162 264 8.7E-32
11 g945.t2 MobiDBLite mobidb-lite consensus disorder prediction 261 282 -
10 g945.t2 MobiDBLite mobidb-lite consensus disorder prediction 263 282 -
2 g945.t2 PANTHER PTHR19375 HEAT SHOCK PROTEIN 70KDA 1 270 9.2E-141
3 g945.t2 PANTHER PTHR19375:SF431 HEAT SHOCK PROTEIN 68 1 270 9.2E-141
4 g945.t2 PRINTS PR00301 70kDa heat shock protein signature 15 35 1.3E-33
5 g945.t2 PRINTS PR00301 70kDa heat shock protein signature 42 61 1.3E-33
6 g945.t2 PRINTS PR00301 70kDa heat shock protein signature 123 139 1.3E-33
1 g945.t2 Pfam PF00012 Hsp70 protein 2 262 5.7E-82
9 g945.t2 SUPERFAMILY SSF53067 Actin-like ATPase domain 1 34 1.06E-5
8 g945.t2 SUPERFAMILY SSF100920 Heat shock protein 70kD (HSP70), peptide-binding domain 39 195 6.8E-62
7 g945.t2 SUPERFAMILY SSF100934 Heat shock protein 70kD (HSP70), C-terminal subdomain 189 267 2.22E-21

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0016887 ATP hydrolysis activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed