Gene loci information

Isoforms of this gene

  • There are 3 isoforms that are expressed from this gene.
  • The longest transcript is g945.t1
  • List of isoforms

g945.t1, g945.t2, g945.t3

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

Pathway

  • This gene belongs to the following 1 pathways
ko03040
ko04010
ko04141
ko04144
ko04213
ko04612
ko04915
ko05020
ko05134
ko05145
ko05162
ko05417

This gene has too many mapped pathways (>3). Please look at the original KEGG entry above for pathway visualization.

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g945.t1) is OG0000077. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 3 XP_012063798.1, XP_012063808.1, XP_012063429.1
Apis mellifera AMELL 3 GB40866-PA, GB49117-PA, GB50609-PA
Culicoides sonorensis CSONO 1 CSON010442-1
Polypedilum nubifer PNUBI 4 Pn.17133, Pn.16785, Pn.10940, Pn.05828
Polypedilum vanderplanki PVAND 4 g2685.t1, g11137.t1, g945.t1, g240.t1
Polypedilum pembai PPEMB 6 g3400.t1, g1919.t1, g1686.t1, g768.t1, g2247.t1, g6108.t1
Belgica antarctica BANTA 5 IU25_12056-mRNA-1, IU25_10276-mRNA-1, IU25_11972-mRNA-1, IU25_13170-mRNA-1, IU25_06173-mRNA-1
Clunio marinus CMARI 5 CRK88344.1, CRK88904.1, CRK88906.1, CRK88905.1, CRK97809.1
Aedes aegypti lvpagwg AAEGYL 13 AAEL018061-PB, AAEL017349-PA, AAEL023321-PA, AAEL019403-PA, AAEL026446-PA, AAEL020330-PA, AAEL017975-PB, AAEL027610-PA, AAEL026215-PA, AAEL025647-PA, AAEL024802-PA, AAEL017976-PB, AAEL020571-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 8 EDS35623.1, EDS32138.1, EDS27883.1, EDS40616.1, EDS39731.1, EDS35622.1, EDS35621.1, EDS40873.1
Culex quinquefasciatus CQUIN 8 CPIJ011083-PA, CPIJ011082-PA, CPIJ006534-PA, CPIJ014283-PA, CPIJ008915-PA, CPIJ011081-PA, CPIJ003550-PA, CPIJ014564-PA
Anopheles atroparvus AATRO 3 AATE011067-PA, AATE009618-PA, AATE020631-PA
Anopheles sinensis china ASINEC 4 ASIC014234-PA, ASIC007054-PA, ASIC000721-PA, ASIC016078-PA
Anopheles dirus ADIRU 2 ADIR008480-PA, ADIR003019-PA
Anopheles farauti AFARA 3 AFAF018975-PA, AFAF005003-PA, AFAF014637-PA
Anopheles epiroticus AEPIR 2 AEPI002061-PA, AEPI007511-PA
Anopheles christyi ACHRI 2 ACHR006971-PA, ACHR002514-PA
Anopheles merus AMERU 3 AMEM017979-PA, AMEM013924-PA, AMEM011018-PA
Anopheles melas AMELA 3 AMEC015935-PA, AMEC015709-PA, AMEC006839-PA
Anopheles arabiensis AARAB 3 AARA017287-PA, AARA009600-PA, AARA017093-PA
Anopheles coluzzii ACOLU 3 ACOM033187-PA, ACOM029534-PA, ACOM024503-PA
Anopheles coluzzii ngousso ACOLUN 5 ACON004944-PA, ACON002076-PA, ACON004192-PA, ACON004581-PA, ACON004583-PA
Anopheles gambiae AGAMB 5 AGAP004581-PA, AGAP004192-PA, AGAP004944-PA, AGAP002076-PA, AGAP004583-PA
Anopheles quadriannulatus AQUAD 2 AQUA009898-PA, AQUA017011-PA
Anopheles minimus AMINI 2 AMIN004160-PA, AMIN002458-PA
Anopheles culicifacies ACULI 3 ACUA013307-PA, ACUA005050-PA, ACUA002882-PA
Anopheles funestus AFUNE 10 AFUN019775-PA, AFUN019178-PA, AFUN019671-PA, AFUN019467-PA, AFUN021047-PA, AFUN011927-PA, AFUN019513-PA, AFUN021277-PA, AFUN019289-PA, AFUN019570-PA
Anopheles stephensi indian ASTEPI 3 ASTEI04786-PA, ASTEI07645-PA, ASTEI05419-PA
Anopheles stephensi ASTEP 4 ASTE004139-PA, ASTE003836-PA, ASTE003422-PA, ASTE003754-PA
Anopheles albimanus AALBI 5 AALB009698-PA, AALB007315-PA, AALB009697-PA, AALB008255-PA, AALB009445-PA
Anopheles darlingi ADARL 7 ADAC010350-PA, ADAC008061-PA, ADAC003118-PA, ADAC005660-PA, ADAC004661-PA, ADAC002898-PA, ADAC005135-PA
Drosophila willistoni DWILL 5 FBpp0249459, FBpp0247471, FBpp0241373, FBpp0242879, FBpp0240152
Drosophila pseudoobscura DPSEU 7 FBpp0281124, FBpp0282005, FBpp0287791, FBpp0329640, FBpp0283415, FBpp0282227, FBpp0275165
Drosophila persimilis DPERS 8 FBpp0179826, FBpp0191276, FBpp0188257, FBpp0187505, FBpp0176641, FBpp0176196, FBpp0184461, FBpp0191427
Drosophila ananassae DANAN 10 FBpp0127244, FBpp0119821, FBpp0119823, FBpp0119822, FBpp0121577, FBpp0121576, FBpp0123440, FBpp0114569, FBpp0121157, FBpp0120764
Drosophila melanogaster DMELA 11 FBpp0082105, FBpp0082514, FBpp0075504, FBpp0082175, FBpp0083974, FBpp0073445, FBpp0082107, FBpp0081986, FBpp0082106, FBpp0082147, FBpp0081956
Drosophila sechellia DSECH 9 FBpp0205465, FBpp0207479, FBpp0204993, FBpp0207535, FBpp0205559, FBpp0206916, FBpp0205519, FBpp0194521, FBpp0205685
Drosophila simulans DSIMU 8 FBpp0318395, FBpp0217280, FBpp0217400, FBpp0321376, FBpp0316480, FBpp0219023, FBpp0212868, FBpp0322811
Drosophila erecta DEREC 11 FBpp0137958, FBpp0137378, FBpp0135665, FBpp0137066, FBpp0137550, FBpp0134206, FBpp0130924, FBpp0135724, FBpp0367840, FBpp0371567, FBpp0135446
Drosophila yakuba DYAKU 8 FBpp0360528, FBpp0271252, FBpp0356092, FBpp0262607, FBpp0255842, FBpp0266999, FBpp0269292, FBpp0352488
Drosophila virilis DVIRI 15 FBpp0230772, FBpp0228613, FBpp0225476, FBpp0232804, FBpp0225726, FBpp0224772, FBpp0396594, FBpp0231198, FBpp0225479, FBpp0225480, FBpp0400875, FBpp0228955, FBpp0237619, FBpp0225478, FBpp0224519
Drosophila mojavensis DMOJA 10 FBpp0163934, FBpp0172136, FBpp0173380, FBpp0159473, FBpp0159472, FBpp0160844, FBpp0171716, FBpp0172579, FBpp0159470, FBpp0159471
Drosophila grimshawi DGRIM 10 FBpp0145881, FBpp0418122, FBpp0152395, FBpp0153004, FBpp0152754, FBpp0149119, FBpp0148549, FBpp0152278, FBpp0405577, FBpp0151238
Lucilia cuprina LCUPR 4 KNC22032, KNC26345, KNC23682, KNC33132
Musca domestica MDOME 9 MDOA009598-PA, MDOA007110-PA, MDOA002958-PA, MDOA014701-PA, MDOA000953-PA, MDOA003756-PA, MDOA015380-PA, MDOA008036-PA, MDOA000018-PA
Stomoxys calcitrans SCALC 7 SCAU015347-PA, SCAU008036-PA, SCAU000678-PA, SCAU002353-PA, SCAU008520-PA, SCAU005225-PA, SCAU003728-PA
Glossina brevipalpis GBREV 5 GBRI045589-PA, GBRI030586-PA, GBRI038364-PA, GBRI045590-PA, GBRI003166-PA
Glossina palpalis GPALP 6 GPPI032264-PA, GPPI019692-PA, GPPI007377-PA, GPPI032277-PA, GPPI020922-PA, GPPI045238-PA
Glossina austeni GAUST 7 GAUT016352-PA, GAUT044827-PA, GAUT044824-PA, GAUT036196-PA, GAUT003528-PA, GAUT036194-PA, GAUT007215-PA
Glossina pallidipes GPALL 6 GPAI006958-PA, GPAI037889-PA, GPAI006961-PA, GPAI018621-PA, GPAI018169-PA, GPAI017725-PA
Glossina morsitans GMORS 6 GMOY012049-PA, GMOY004286-PA, GMOY009495-PA, GMOY003216-PA, GMOY009493-PA, GMOY011568-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g945.t1) is OG0000501. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN740_c0_g1_i3.p1, TRINITY_DN50912_c0_g1_i2.p1, TRINITY_DN2166_c0_g1_i1.p1
Parochlus steinenii PSTEI PSG11399, PSG09528
Trissopelopia nemorum TNEMO TRINITY_DN1260_c0_g2_i1.p1, TRINITY_DN1260_c0_g1_i2.p1, TRINITY_DN3_c0_g2_i4.p1, TRINITY_DN14555_c0_g1_i3.p1
Paraheptagyia tonnoiri PTONN TRINITY_DN179_c0_g2_i6.p1
Telmatogeton pecinata TPECI TRINITY_DN16454_c0_g1_i3.p1, TRINITY_DN512_c1_g8_i1.p1, TRINITY_DN512_c1_g4_i1.p1, TRINITY_DN1715_c0_g1_i1.p1
Cricotopus draysoni CDRAY TRINITY_DN104434_c0_g1_i1.p1, TRINITY_DN23378_c0_g1_i1.p1, TRINITY_DN58555_c1_g1_i1.p1, TRINITY_DN1507_c1_g2_i1.p1, TRINITY_DN9260_c0_g1_i2.p1, TRINITY_DN29889_c0_g1_i1.p1, TRINITY_DN1789_c0_g1_i1.p1, TRINITY_DN89762_c0_g1_i1.p1, TRINITY_DN1507_c1_g1_i4.p1, TRINITY_DN487_c0_g1_i3.p1
Clunio marinus CMARI CRK88904.1, CRK88906.1, CRK88905.1, CRK97809.1
Cardiocladius sp CARDI TRINITY_DN1099_c0_g2_i1.p1, TRINITY_DN1865_c0_g1_i2.p1
Belgica antarctica BANTA IU25_12056-mRNA-1, IU25_10276-mRNA-1, IU25_11972-mRNA-1, IU25_13170-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN95522_c0_g1_i1.p1, TRINITY_DN3930_c0_g1_i1.p1, TRINITY_DN8480_c0_g1_i1.p1
Chironomus riparius CRIPA g8655.t1, g17990.t1, g3831.t1
Chironomus columbiensis CCOLU TRINITY_DN11408_c0_g1_i7.p1, TRINITY_DN251_c0_g1_i3.p1, TRINITY_DN251_c0_g2_i1.p1, TRINITY_DN13075_c0_g1_i1.p1, TRINITY_DN3159_c0_g1_i10.p1
Chironomus tentans CTENT g5561.t1, g4275.t1, g5559.t1, g4101.t1
Chironomus dilutus CDILU TRINITY_DN412_c0_g1_i3.p1, TRINITY_DN246_c0_g2_i1.p1, TRINITY_DN12127_c0_g1_i1.p1, TRINITY_DN412_c0_g2_i1.p1
Polypedilum nubifer PNUBI Pn.16785, Pn.10940
Polypedilum vanderplanki PVAND g11137.t1, g945.t1
Polypedilum pembai PPEMB g3400.t1, g1686.t1, g768.t1, g2247.t1, g6108.t1
Culicoides sonorensis CSONO CSON010442-1
Aedes aegypti lvpagwg AAEGYL AAEL023321-PA, AAEL019403-PA, AAEL026446-PA, AAEL020330-PA, AAEL017975-PB, AAEL027610-PA, AAEL025647-PA, AAEL017976-PB, AAEL020571-PA
Anopheles gambiae AGAMB AGAP004944-PA, AGAP002076-PA, AGAP004583-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation