Gene loci information

Isoforms of this gene

  • There are 3 isoforms that are expressed from this gene.
  • The longest transcript is g17009.t1
  • List of isoforms

g17009.t1, g17009.t2, g17009.t3

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

This gene did not have any KEGG Ortholog annotations (KAAS, GHOSTZ).

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g17009.t1) is OG0000029. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 4 XP_012055847.1, XP_012064058.1, XP_012057313.1, XP_012058755.1
Apis mellifera AMELL 4 GB48667-PA, GB54549-PA, GB43247-PA, GB43248-PA
Culicoides sonorensis CSONO 8 CSON004548-1, CSON001906-1, CSON009180-1, CSON001905-1, CSON001904-1, CSON008231-1, CSON014898-1, CSON005787-1
Polypedilum nubifer PNUBI 12 Pn.09787, Pn.04640, Pn.10881, Pn.02321, Pn.10879, Pn.10878, Pn.01317, Pn.09501, Pn.10880, Pn.04215, Pn.09502, Pn.15467
Polypedilum vanderplanki PVAND 11 g5665.t1, g1524.t1, g5991.t13, g5994.t1, g1527.t1, g5993.t1, g17009.t1, g6495.t1, g1523.t1, g9742.t1, g5992.t1
Polypedilum pembai PPEMB 9 g759.t1, g8020.t1, g10764.t1, g9886.t1, g9884.t1, g9885.t1, g13126.t1, g14230.t1, g260.t1
Belgica antarctica BANTA 6 IU25_03117-mRNA-1, IU25_00293-mRNA-1, IU25_03018-mRNA-1, IU25_08996-mRNA-1, IU25_09658-mRNA-1, IU25_03185-mRNA-1
Clunio marinus CMARI 2 CRL06768.1, CRL00644.1
Aedes aegypti lvpagwg AAEGYL 11 AAEL010540-PA, AAEL010536-PB, AAEL010532-PA, AAEL000667-PB, AAEL000647-PA, AAEL003434-PA, AAEL000651-PA, AAEL000642-PA, AAEL000678-PA, AAEL009524-PA, AAEL017128-PB
Culex quinquefasciatus quinquefasciatus CQUINQ 19 EDS38952.1, EDS38953.1, EDS26391.1, EDS36565.1, EDS38951.1, EDS38949.1, EDS27602.1, EDS30627.1, EDS26392.1, EDS38950.1, EDS30626.1, EDS43598.1, EDS26389.1, EDS30629.1, EDS33620.1, EDS26387.1, EDS27601.1, EDS30628.1, EDS30630.1
Culex quinquefasciatus CQUIN 19 CPIJ013173-PA, CPIJ005212-PA, CPIJ019690-PA, CPIJ013172-PA, CPIJ012204-PA, CPIJ005208-PA, CPIJ019691-PA, CPIJ018571-PA, CPIJ018570-PA, CPIJ010128-PA, CPIJ013170-PA, CPIJ005213-PA, CPIJ019689-PA, CPIJ019692-PA, CPIJ013169-PA, CPIJ013171-PA, CPIJ005210-PA, CPIJ019693-PA, CPIJ016362-PA
Anopheles atroparvus AATRO 8 AATE015136-PA, AATE019657-PA, AATE006628-PA, AATE018919-PA, AATE015305-PA, AATE007736-PA, AATE008319-PA, AATE000615-PA
Anopheles sinensis china ASINEC 8 ASIC020730-PA, ASIC018219-PA, ASIC020732-PA, ASIC018220-PA, ASIC011658-PA, ASIC020727-PA, ASIC020733-PA, ASIC020729-PA
Anopheles dirus ADIRU 6 ADIR001930-PA, ADIR011404-PA, ADIR011403-PA, ADIR000540-PA, ADIR000539-PA, ADIR008105-PA
Anopheles farauti AFARA 11 AFAF015937-PA, AFAF013216-PA, AFAF007492-PA, AFAF014795-PA, AFAF003180-PA, AFAF017116-PA, AFAF021832-PA, AFAF002526-PA, AFAF004604-PA, AFAF018983-PA, AFAF005346-PA
Anopheles epiroticus AEPIR 7 AEPI015319-PA, AEPI015321-PA, AEPI005933-PA, AEPI002299-PA, AEPI015320-PA, AEPI002212-PA, AEPI015322-PA
Anopheles christyi ACHRI 4 ACHR004858-PA, ACHR005006-PA, ACHR003682-PA, ACHR003681-PA
Anopheles merus AMERU 11 AMEM011358-PA, AMEM018353-PA, AMEM008847-PA, AMEM006004-PA, AMEM003587-PA, AMEM016310-PA, AMEM012211-PA, AMEM016633-PA, AMEM003513-PA, AMEM015812-PA, AMEM000246-PA
Anopheles melas AMELA 9 AMEC005890-PA, AMEC020962-PA, AMEC012073-PA, AMEC008775-PA, AMEC002916-PA, AMEC014273-PA, AMEC015551-PA, AMEC017873-PA, AMEC008298-PA
Anopheles arabiensis AARAB 8 AARA003472-PA, AARA007508-PA, AARA009526-PA, AARA015784-PA, AARA009525-PA, AARA017081-PA, AARA017283-PA, AARA017083-PA
Anopheles coluzzii ACOLU 11 ACOM040554-PA, ACOM024825-PA, ACOM040552-PA, ACOM042226-PA, ACOM040553-PA, ACOM040555-PA, ACOM026132-PA, ACOM032214-PA, ACOM042578-PA, ACOM042577-PA, ACOM040556-PA
Anopheles coluzzii ngousso ACOLUN 11 ACON008963-PA, ACON011939-PA, ACON008962-PA, ACON008961-PA, ACON012401-PA, ACON012400-PA, ACON002102-PA, ACON008964-PA, ACON006019-PA, ACON012399-PA, ACON008965-PA
Anopheles gambiae AGAMB 11 AGAP011939-PA, AGAP002102-PA, AGAP008962-PA, AGAP012401-PA, AGAP012400-PA, AGAP012399-PA, AGAP006019-PA, AGAP008961-PA, AGAP008963-PA, AGAP008964-PA, AGAP008965-PA
Anopheles quadriannulatus AQUAD 6 AQUA017106-PA, AQUA005658-PA, AQUA017105-PA, AQUA002270-PA, AQUA014347-PA, AQUA002269-PA
Anopheles minimus AMINI 8 AMIN015982-PA, AMIN000636-PA, AMIN015537-PA, AMIN008926-PA, AMIN009406-PA, AMIN009407-PA, AMIN015981-PA, AMIN010925-PA
Anopheles culicifacies ACULI 10 ACUA013570-PA, ACUA021277-PA, ACUA023056-PA, ACUA010118-PA, ACUA026657-PA, ACUA020285-PA, ACUA000344-PA, ACUA023991-PA, ACUA002457-PA, ACUA021348-PA
Anopheles funestus AFUNE 11 AFUN022044-PA, AFUN021721-PA, AFUN021718-PA, AFUN021410-PA, AFUN021409-PA, AFUN006813-PA, AFUN021720-PA, AFUN010690-PA, AFUN021719-PA, AFUN022248-PA, AFUN004076-PA
Anopheles stephensi indian ASTEPI 7 ASTEI02311-PA, ASTEI00405-PA, ASTEI01952-PA, ASTEI02309-PA, ASTEI06307-PA, ASTEI02310-PA, ASTEI01953-PA
Anopheles stephensi ASTEP 5 ASTE004823-PA, ASTE000030-PA, ASTE004580-PA, ASTE000029-PA, ASTE004581-PA
Anopheles albimanus AALBI 9 AALB015772-PA, AALB015728-PA, AALB015549-PA, AALB015771-PA, AALB015774-PA, AALB003812-PA, AALB003811-PA, AALB000007-PA, AALB015773-PA
Anopheles darlingi ADARL 8 ADAC005038-PA, ADAC002351-PA, ADAC000452-PA, ADAC002349-PA, ADAC005040-PA, ADAC005041-PA, ADAC002350-PA, ADAC007180-PA
Drosophila willistoni DWILL 10 FBpp0250955, FBpp0250646, FBpp0250953, FBpp0250650, FBpp0250648, FBpp0377139, FBpp0250954, FBpp0244307, FBpp0250649, FBpp0374754
Drosophila pseudoobscura DPSEU 10 FBpp0280821, FBpp0277407, FBpp0277409, FBpp0277408, FBpp0277026, FBpp0280819, FBpp0277028, FBpp0277411, FBpp0277406, FBpp0277027
Drosophila persimilis DPERS 10 FBpp0175330, FBpp0174966, FBpp0175334, FBpp0175331, FBpp0179479, FBpp0175332, FBpp0179478, FBpp0174967, FBpp0175333, FBpp0174968
Drosophila ananassae DANAN 10 FBpp0115553, FBpp0124798, FBpp0115556, FBpp0115779, FBpp0115777, FBpp0124799, FBpp0115552, FBpp0115555, FBpp0115778, FBpp0115554
Drosophila melanogaster DMELA 10 FBpp0087838, FBpp0087831, FBpp0087828, FBpp0087837, FBpp0087827, FBpp0423050, FBpp0087836, FBpp0079859, FBpp0087826, FBpp0271830
Drosophila sechellia DSECH 9 FBpp0202161, FBpp0202511, FBpp0202512, FBpp0202516, FBpp0202513, FBpp0208101, FBpp0202515, FBpp0202163, FBpp0202162
Drosophila simulans DSIMU 10 FBpp0326217, FBpp0313500, FBpp0315153, FBpp0208972, FBpp0208571, FBpp0222195, FBpp0315700, FBpp0222196, FBpp0208971, FBpp0312923
Drosophila erecta DEREC 10 FBpp0129185, FBpp0141906, FBpp0142288, FBpp0141910, FBpp0129186, FBpp0142287, FBpp0129187, FBpp0141909, FBpp0141905, FBpp0141908
Drosophila yakuba DYAKU 10 FBpp0264215, FBpp0268003, FBpp0264212, FBpp0263556, FBpp0264211, FBpp0267993, FBpp0356685, FBpp0263557, FBpp0264214, FBpp0268014
Drosophila virilis DVIRI 10 FBpp0396571, FBpp0236132, FBpp0236129, FBpp0235046, FBpp0236133, FBpp0235047, FBpp0236134, FBpp0235049, FBpp0399783, FBpp0236130
Drosophila mojavensis DMOJA 10 FBpp0167912, FBpp0173922, FBpp0167915, FBpp0389106, FBpp0170118, FBpp0380174, FBpp0170114, FBpp0167913, FBpp0170115, FBpp0167914
Drosophila grimshawi DGRIM 9 FBpp0154999, FBpp0154716, FBpp0147717, FBpp0154998, FBpp0155000, FBpp0421827, FBpp0154719, FBpp0154997, FBpp0409672
Lucilia cuprina LCUPR 7 KNC33641, KNC32000, KNC33697, KNC33639, KNC31221, KNC33640, KNC33637
Musca domestica MDOME 13 MDOA006195-PB, MDOA015535-PA, MDOA004992-PA, MDOA000733-PA, MDOA004315-PA, MDOA014316-PA, MDOA013974-PA, MDOA006364-PA, MDOA012650-PA, MDOA010011-PA, MDOA001746-PA, MDOA007283-PB, MDOA004717-PA
Stomoxys calcitrans SCALC 9 SCAU014458-PA, SCAU012582-PA, SCAU011182-PA, SCAU015262-PA, SCAU001488-PA, SCAU014221-PA, SCAU013835-PA, SCAU016459-PB, SCAU014882-PA
Glossina brevipalpis GBREV 2 GBRI010625-PA, GBRI036288-PA
Glossina palpalis GPALP 2 GPPI018583-PA, GPPI023879-PA
Glossina austeni GAUST 2 GAUT048635-PA, GAUT028923-PA
Glossina pallidipes GPALL 2 GPAI034221-PA, GPAI020945-PA
Glossina morsitans GMORS 2 GMOY003566-PA, GMOY010640-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g17009.t1) is OG0009808. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON none
Parochlus steinenii PSTEI none
Trissopelopia nemorum TNEMO none
Paraheptagyia tonnoiri PTONN none
Telmatogeton pecinata TPECI TRINITY_DN0_c6324_g1_i1.p1, TRINITY_DN351_c0_g1_i1.p1
Cricotopus draysoni CDRAY TRINITY_DN15030_c0_g1_i1.p1
Clunio marinus CMARI CRL06768.1
Cardiocladius sp CARDI TRINITY_DN1751_c0_g1_i1.p1, TRINITY_DN7516_c0_g1_i1.p2
Belgica antarctica BANTA IU25_03117-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN2758_c0_g1_i6.p1
Chironomus riparius CRIPA g13555.t1
Chironomus columbiensis CCOLU TRINITY_DN9110_c0_g1_i1.p1, TRINITY_DN2119_c0_g1_i3.p1
Chironomus tentans CTENT g5995.t1, g5996.t1
Chironomus dilutus CDILU TRINITY_DN622_c0_g1_i12.p1
Polypedilum nubifer PNUBI Pn.09787
Polypedilum vanderplanki PVAND g17009.t1
Polypedilum pembai PPEMB g260.t1
Culicoides sonorensis CSONO none
Aedes aegypti lvpagwg AAEGYL none
Anopheles gambiae AGAMB none

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation