Gene loci information

Isoforms of this gene

  • There are 1 isoforms that are expressed from this gene.
  • The longest transcript is g4040.t1
  • List of isoforms

g4040.t1

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

This gene did not have any KEGG Ortholog annotations (KAAS, GHOSTZ).

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g4040.t1) is OG0000011. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 11 XP_012062983.1, XP_012054481.1, XP_012062181.1, XP_012054479.1, XP_012054477.1, XP_012054476.1, XP_012054474.1, XP_012061189.1, XP_012054478.1, XP_012054475.1, XP_012054482.1
Apis mellifera AMELL 12 GB51303-PA, GB51292-PA, GB51290-PA, GB51284-PA, GB51295-PA, GB51287-PA, GB51299-PA, GB51301-PA, GB47954-PA, GB55360-PA, GB51302-PA, GB48966-PA
Culicoides sonorensis CSONO 19 CSON014852-1, CSON004322-1, CSON005903-1, CSON010350-1, CSON004046-1, CSON002406-1, CSON011453-1, CSON003596-1, CSON002403-1, CSON002405-1, CSON002404-1, CSON006593-1, CSON008926-1, CSON010267-1, CSON003584-1, CSON012128-1, CSON002377-1, CSON002528-1, CSON002378-1
Polypedilum nubifer PNUBI 18 Pn.02113, Pn.07863, Pn.10595, Pn.02084, Pn.01635, Pn.13619, Pn.03161, Pn.16810, Pn.04861, Pn.07234, Pn.16811, Pn.05764, Pn.03421, Pn.13684, Pn.00514, Pn.11798, Pn.03420, Pn.03960
Polypedilum vanderplanki PVAND 18 g4054.t1, g507.t1, g4025.t2, g1876.t1, g4040.t1, g5476.t1, g804.t1, g4028.t1, g5477.t1, g4042.t1, g4031.t1, g4057.t1, g10056.t1, g4033.t2, g4027.t1, g4041.t1, g8177.t1, g4052.t1
Polypedilum pembai PPEMB 21 g13189.t1, g14120.t1, g2360.t1, g11074.t1, g11231.t1, g14322.t1, g10144.t1, g11543.t1, g9631.t1, g14346.t1, g12678.t1, g5018.t1, g12212.t1, g9937.t1, g3180.t1, g2187.t1, g4491.t1, g11056.t1, g3908.t1, g1808.t1, g5790.t1
Belgica antarctica BANTA 18 IU25_07628-mRNA-1, IU25_12189-mRNA-1, IU25_12676-mRNA-1, IU25_00273-mRNA-1, IU25_10330-mRNA-1, IU25_08613-mRNA-1, IU25_12677-mRNA-1, IU25_10329-mRNA-1, IU25_00257-mRNA-1, IU25_13508-mRNA-1, IU25_00260-mRNA-1, IU25_00274-mRNA-1, IU25_08609-mRNA-1, IU25_00275-mRNA-1, IU25_10460-mRNA-1, IU25_03361-mRNA-1, IU25_08156-mRNA-1, IU25_00276-mRNA-1
Clunio marinus CMARI 18 CRK88425.1, CRK96085.1, CRK95233.1, CRK95223.1, CRK95190.1, CRK95212.1, CRK86489.1, CRK95171.1, CRK90217.1, CRK86487.1, CRK95250.1, CRK95181.1, CRK95187.1, CRK94511.1, CRK94964.1, CRK95196.1, CRK95163.1, CRL04190.1
Aedes aegypti lvpagwg AAEGYL 14 AAEL014557-PB, AAEL020427-PA, AAEL014277-PA, AAEL025918-PA, AAEL025694-PA, AAEL009742-PG, AAEL004130-PA, AAEL022179-PE, AAEL009949-PA, AAEL009950-PB, AAEL003277-PA, AAEL027035-PA, AAEL014032-PD, AAEL005195-PB
Culex quinquefasciatus quinquefasciatus CQUINQ 18 EDS43560.1, EDS33481.1, EDS27379.1, EDS27392.1, EDS27378.1, EDS27380.1, EDS27389.1, EDS27383.1, EDS27377.1, EDS32181.1, EDS27376.1, EDS27375.1, EDS27388.1, EDS27374.1, EDS27393.1, EDS27384.1, EDS29287.1, EDS42157.1
Culex quinquefasciatus CQUIN 18 CPIJ001007-PA, CPIJ001004-PA, CPIJ001003-PA, CPIJ001021-PA, CPIJ001008-PA, CPIJ009458-PA, CPIJ001022-PA, CPIJ001012-PA, CPIJ001011-PA, CPIJ001016-PA, CPIJ004813-PA, CPIJ019078-PA, CPIJ001005-PA, CPIJ015550-PA, CPIJ001002-PA, CPIJ001017-PA, CPIJ001006-PA, CPIJ002050-PA
Anopheles atroparvus AATRO 17 AATE004168-PA, AATE009299-PA, AATE010544-PA, AATE010174-PA, AATE019196-PA, AATE012818-PA, AATE011248-PA, AATE017530-PA, AATE001611-PA, AATE007016-PA, AATE001065-PA, AATE001145-PA, AATE012538-PA, AATE020340-PA, AATE004822-PA, AATE001676-PA, AATE012564-PA
Anopheles sinensis china ASINEC 11 ASIC010893-PA, ASIC010885-PA, ASIC010895-PA, ASIC010433-PA, ASIC017257-PA, ASIC010891-PA, ASIC010884-PA, ASIC010886-PA, ASIC017258-PA, ASIC007554-PA, ASIC010892-PA
Anopheles dirus ADIRU 15 ADIR009072-PA, ADIR009076-PA, ADIR015681-PA, ADIR009082-PA, ADIR009073-PA, ADIR009083-PA, ADIR009079-PA, ADIR009077-PA, ADIR009074-PA, ADIR009075-PA, ADIR003024-PA, ADIR009080-PA, ADIR009078-PA, ADIR000891-PA, ADIR008876-PA
Anopheles farauti AFARA 15 AFAF018574-PA, AFAF011271-PA, AFAF013064-PA, AFAF004701-PA, AFAF021657-PA, AFAF020319-PA, AFAF016201-PA, AFAF002812-PA, AFAF006972-PA, AFAF001894-PA, AFAF002219-PA, AFAF018866-PA, AFAF000145-PA, AFAF003499-PA, AFAF007078-PA
Anopheles epiroticus AEPIR 9 AEPI004972-PA, AEPI015233-PA, AEPI006141-PA, AEPI009869-PA, AEPI004971-PA, AEPI009105-PA, AEPI004973-PA, AEPI010023-PA, AEPI010022-PA
Anopheles christyi ACHRI 11 ACHR000617-PA, ACHR014107-PA, ACHR006348-PA, ACHR008624-PA, ACHR003915-PA, ACHR003502-PA, ACHR006697-PA, ACHR000192-PA, ACHR003180-PA, ACHR006287-PA, ACHR000155-PA
Anopheles merus AMERU 7 AMEM007254-PA, AMEM004604-PA, AMEM010154-PA, AMEM012865-PA, AMEM008031-PA, AMEM000256-PA, AMEM010753-PA
Anopheles melas AMELA 7 AMEC023260-PA, AMEC018423-PA, AMEC018206-PA, AMEC008489-PA, AMEC003843-PA, AMEC001781-PA, AMEC007997-PA
Anopheles arabiensis AARAB 11 AARA006563-PA, AARA006567-PA, AARA011782-PA, AARA011783-PA, AARA002011-PA, AARA018256-PA, AARA016379-PA, AARA012068-PA, AARA006565-PA, AARA011457-PA, AARA004893-PA
Anopheles coluzzii ACOLU 9 ACOM036180-PA, ACOM029249-PA, ACOM036179-PA, ACOM027806-PA, ACOM026052-PA, ACOM041641-PA, ACOM034313-PA, ACOM035026-PA, ACOM032658-PA
Anopheles coluzzii ngousso ACOLUN 10 ACON004646-PA, ACON013157-PA, ACON004662-PA, ACON004660-PB, ACON005281-PA, ACON004664-PA, ACON004661-PA, ACON009646-PA, ACON004659-PA, ACON001560-PA
Anopheles gambiae AGAMB 10 AGAP009646-PA, AGAP004659-PA, AGAP004646-PA, AGAP013157-PA, AGAP001560-PA, AGAP004660-PA, AGAP005281-PA, AGAP004661-PA, AGAP004662-PB, AGAP004664-PA
Anopheles quadriannulatus AQUAD 13 AQUA010390-PA, AQUA011389-PA, AQUA000433-PA, AQUA015258-PA, AQUA000284-PA, AQUA000096-PA, AQUA002721-PA, AQUA000095-PA, AQUA011797-PA, AQUA016476-PA, AQUA010392-PA, AQUA010393-PA, AQUA010391-PA
Anopheles minimus AMINI 14 AMIN015734-PA, AMIN000114-PA, AMIN000113-PA, AMIN000117-PA, AMIN000106-PA, AMIN000119-PA, AMIN000118-PA, AMIN000111-PA, AMIN000116-PA, AMIN000108-PA, AMIN000115-PA, AMIN000112-PA, AMIN010769-PA, AMIN002453-PA
Anopheles culicifacies ACULI 17 ACUA007557-PA, ACUA028250-PA, ACUA029092-PA, ACUA006212-PA, ACUA008722-PA, ACUA026846-PA, ACUA011088-PA, ACUA001481-PA, ACUA010574-PA, ACUA003169-PA, ACUA002031-PA, ACUA015810-PA, ACUA023372-PA, ACUA000021-PA, ACUA016301-PA, ACUA006308-PA, ACUA014155-PA
Anopheles funestus AFUNE 11 AFUN001180-PA, AFUN020635-PA, AFUN020634-PA, AFUN020318-PA, AFUN020058-PA, AFUN016350-PA, AFUN008465-PA, AFUN019944-PA, AFUN004483-PA, AFUN008169-PA, AFUN006868-PB
Anopheles stephensi indian ASTEPI 14 ASTEI06926-PA, ASTEI06922-PA, ASTEI05423-PA, ASTEI06920-PA, ASTEI06918-PA, ASTEI06921-PA, ASTEI04701-PA, ASTEI06924-PA, ASTEI06919-PA, ASTEI06930-PA, ASTEI06929-PA, ASTEI06923-PA, ASTEI10205-PA, ASTEI06925-PA
Anopheles stephensi ASTEP 16 ASTE004076-PA, ASTE000403-PA, ASTE000398-PA, ASTE011152-PA, ASTE000394-PA, ASTE000399-PA, ASTE000405-PA, ASTE000400-PA, ASTE000396-PA, ASTE009229-PA, ASTE000395-PA, ASTE004075-PA, ASTE016107-PA, ASTE000397-PA, ASTE003428-PA, ASTE004078-PA
Anopheles albimanus AALBI 13 AALB002901-PA, AALB003920-PA, AALB014289-PA, AALB002902-PA, AALB002905-PA, AALB001873-PA, AALB002907-PA, AALB002900-PA, AALB002906-PA, AALB004396-PA, AALB002908-PA, AALB002897-PA, AALB002903-PA
Anopheles darlingi ADARL 7 ADAC007855-PA, ADAC001419-PA, ADAC008864-PA, ADAC000706-PA, ADAC010621-PA, ADAC006662-PA, ADAC006663-PA
Drosophila willistoni DWILL 15 FBpp0375901, FBpp0376826, FBpp0244057, FBpp0239979, FBpp0376515, FBpp0239968, FBpp0379909, FBpp0377049, FBpp0241396, FBpp0240926, FBpp0246553, FBpp0242996, FBpp0377794, FBpp0376168, FBpp0239972
Drosophila pseudoobscura DPSEU 15 FBpp0333087, FBpp0300737, FBpp0338261, FBpp0283269, FBpp0281884, FBpp0330897, FBpp0300460, FBpp0284304, FBpp0284296, FBpp0274845, FBpp0281658, FBpp0281794, FBpp0284310, FBpp0338698, FBpp0279808
Drosophila persimilis DPERS 15 FBpp0186153, FBpp0190017, FBpp0185880, FBpp0186151, FBpp0186147, FBpp0186143, FBpp0177784, FBpp0188127, FBpp0187111, FBpp0187108, FBpp0185885, FBpp0186160, FBpp0187109, FBpp0182626, FBpp0186148
Drosophila ananassae DANAN 13 FBpp0120989, FBpp0121114, FBpp0120984, FBpp0349666, FBpp0121113, FBpp0120981, FBpp0349045, FBpp0120995, FBpp0351290, FBpp0121116, FBpp0347292, FBpp0120382, FBpp0120987
Drosophila melanogaster DMELA 15 FBpp0306007, FBpp0082829, FBpp0081138, FBpp0082400, FBpp0081194, FBpp0081170, FBpp0081171, FBpp0082793, FBpp0088333, FBpp0081139, FBpp0307151, FBpp0082826, FBpp0423170, FBpp0083671, FBpp0081161
Drosophila sechellia DSECH 18 FBpp0192013, FBpp0205992, FBpp0196886, FBpp0196888, FBpp0192394, FBpp0196887, FBpp0207335, FBpp0192004, FBpp0192006, FBpp0196882, FBpp0192393, FBpp0192007, FBpp0204846, FBpp0192391, FBpp0192001, FBpp0191999, FBpp0196877, FBpp0205111
Drosophila simulans DSIMU 14 FBpp0323568, FBpp0314975, FBpp0218299, FBpp0217926, FBpp0217924, FBpp0315119, FBpp0210988, FBpp0322481, FBpp0313725, FBpp0324190, FBpp0218297, FBpp0314200, FBpp0312827, FBpp0217927
Drosophila erecta DEREC 15 FBpp0365990, FBpp0366910, FBpp0135352, FBpp0128804, FBpp0366121, FBpp0368018, FBpp0132233, FBpp0368094, FBpp0131048, FBpp0132222, FBpp0369120, FBpp0128781, FBpp0368548, FBpp0132241, FBpp0128870
Drosophila yakuba DYAKU 15 FBpp0363074, FBpp0271137, FBpp0269894, FBpp0361770, FBpp0356518, FBpp0356091, FBpp0271133, FBpp0271466, FBpp0270840, FBpp0269893, FBpp0270837, FBpp0270842, FBpp0270849, FBpp0265000, FBpp0269032
Drosophila virilis DVIRI 15 FBpp0391059, FBpp0226034, FBpp0238872, FBpp0394399, FBpp0399997, FBpp0393934, FBpp0398787, FBpp0237720, FBpp0238345, FBpp0238361, FBpp0396472, FBpp0238352, FBpp0391976, FBpp0225016, FBpp0238590
Drosophila mojavensis DMOJA 18 FBpp0163213, FBpp0167139, FBpp0173936, FBpp0163497, FBpp0172970, FBpp0388055, FBpp0173938, FBpp0384886, FBpp0172977, FBpp0383982, FBpp0160579, FBpp0173932, FBpp0159739, FBpp0383380, FBpp0387652, FBpp0173934, FBpp0174027, FBpp0381897
Drosophila grimshawi DGRIM 15 FBpp0408697, FBpp0408227, FBpp0147612, FBpp0417084, FBpp0153382, FBpp0151949, FBpp0153385, FBpp0422384, FBpp0405416, FBpp0153381, FBpp0153387, FBpp0404066, FBpp0150582, FBpp0153390, FBpp0152036
Lucilia cuprina LCUPR 13 KNC34733, KNC34762, KNC20641, KNC25904, KNC34727, KNC34731, KNC34795, KNC34760, KNC34758, KNC34800, KNC24510, KNC34729, KNC34749
Musca domestica MDOME 16 MDOA001623-PB, MDOA014985-PA, MDOA010461-PC, MDOA007321-PB, MDOA009092-PA, MDOA001063-PH, MDOA014995-PA, MDOA004864-PA, MDOA015506-PA, MDOA003337-PB, MDOA006352-PB, MDOA009747-PA, MDOA005309-PB, MDOA015126-PA, MDOA008087-PB, MDOA015808-PA
Stomoxys calcitrans SCALC 14 SCAU012052-PA, SCAU006367-PA, SCAU008661-PA, SCAU002828-PA, SCAU005194-PA, SCAU003132-PA, SCAU008981-PA, SCAU006090-PA, SCAU008222-PA, SCAU015152-PA, SCAU011091-PA, SCAU010670-PD, SCAU010814-PA, SCAU012322-PA
Glossina brevipalpis GBREV 16 GBRI025314-PA, GBRI022331-PA, GBRI006032-PA, GBRI006000-PA, GBRI016296-PA, GBRI005985-PA, GBRI016516-PA, GBRI022335-PA, GBRI022334-PA, GBRI022323-PA, GBRI006031-PA, GBRI012282-PA, GBRI018355-PA, GBRI006864-PA, GBRI006016-PA, GBRI006002-PA
Glossina palpalis GPALP 16 GPPI011320-PA, GPPI000843-PA, GPPI024201-PA, GPPI011397-PA, GPPI011322-PA, GPPI011338-PA, GPPI011367-PA, GPPI011135-PA, GPPI011090-PA, GPPI006781-PA, GPPI011105-PA, GPPI011380-PA, GPPI011172-PA, GPPI011351-PA, GPPI011366-PA, GPPI011352-PA
Glossina austeni GAUST 16 GAUT044635-PA, GAUT010671-PA, GAUT017920-PA, GAUT044628-PA, GAUT040539-PA, GAUT000188-PA, GAUT017893-PA, GAUT044617-PA, GAUT044634-PA, GAUT013481-PA, GAUT031646-PA, GAUT017900-PA, GAUT017905-PA, GAUT027880-PA, GAUT000600-PA, GAUT044604-PA
Glossina pallidipes GPALL 16 GPAI013130-PA, GPAI013131-PA, GPAI001102-PA, GPAI047154-PA, GPAI001114-PA, GPAI001086-PA, GPAI000396-PA, GPAI001088-PA, GPAI001116-PA, GPAI013143-PA, GPAI001074-PA, GPAI001087-PA, GPAI001110-PA, GPAI047689-PA, GPAI013102-PA, GPAI034001-PA
Glossina morsitans GMORS 10 GMOY002389-PA, GMOY004909-PA, GMOY008646-PA, GMOY005545-PA, GMOY001707-PA, GMOY003131-PA, GMOY012124-PA, GMOY007076-PA, GMOY009947-PA, GMOY011177-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g4040.t1) is OG0003648. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON none
Parochlus steinenii PSTEI PSG05632
Trissopelopia nemorum TNEMO TRINITY_DN2073_c0_g4_i3.p1, TRINITY_DN2073_c0_g7_i1.p1, TRINITY_DN49837_c0_g1_i1.p1
Paraheptagyia tonnoiri PTONN none
Telmatogeton pecinata TPECI TRINITY_DN2101_c0_g1_i4.p1
Cricotopus draysoni CDRAY TRINITY_DN12454_c0_g1_i3.p1
Clunio marinus CMARI CRK95223.1, CRK95212.1
Cardiocladius sp CARDI TRINITY_DN48326_c0_g1_i1.p4, TRINITY_DN1826_c0_g4_i3.p1, TRINITY_DN16066_c0_g1_i1.p2
Belgica antarctica BANTA IU25_00273-mRNA-1, IU25_00260-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN3486_c0_g1_i5.p1, TRINITY_DN32443_c0_g1_i1.p1
Chironomus riparius CRIPA g3273.t1
Chironomus columbiensis CCOLU TRINITY_DN6058_c0_g1_i9.p1
Chironomus tentans CTENT g14073.t1
Chironomus dilutus CDILU TRINITY_DN5754_c0_g1_i3.p1
Polypedilum nubifer PNUBI Pn.11798, Pn.02113
Polypedilum vanderplanki PVAND g4042.t1, g4041.t1, g4040.t1
Polypedilum pembai PPEMB g13189.t1, g2360.t1
Culicoides sonorensis CSONO CSON003584-1, CSON008926-1, CSON005903-1
Aedes aegypti lvpagwg AAEGYL AAEL014032-PD
Anopheles gambiae AGAMB AGAP004661-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation

## [1] "All isoforms (1) from this genes has 0 TPM."