Gene loci information

Isoforms of this gene

  • There are 1 isoforms that are expressed from this gene.
  • The longest transcript is g6743.t1
  • List of isoforms

g6743.t1

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

Pathway

This gene does not belong to any pathways.

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g6743.t1) is OG0000085. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 1 XP_012060606.1
Apis mellifera AMELL 1 GB52755-PA
Culicoides sonorensis CSONO 5 CSON001820-1, CSON001819-1, CSON002617-1, CSON004595-1, CSON003654-1
Polypedilum nubifer PNUBI 9 Pn.09884, Pn.03425, Pn.07229, Pn.03158, Pn.13393, Pn.09843, Pn.11586, Pn.17042, Pn.09007
Polypedilum vanderplanki PVAND 11 g1283.t1, g5755.t1, g1307.t1, g6743.t1, g2463.t1, g2646.t1, g5834.t1, g1304.t1, g1305.t1, g7127.t1, g1306.t1
Polypedilum pembai PPEMB 10 g9390.t1, g2872.t1, g9950.t1, g2723.t1, g9374.t1, g9391.t1, g12692.t1, g7945.t1, g13608.t1, g14112.t1
Belgica antarctica BANTA 29 IU25_10111-mRNA-1, IU25_05409-mRNA-1, IU25_10113-mRNA-1, IU25_00723-mRNA-1, IU25_02868-mRNA-1, IU25_06006-mRNA-1, IU25_00904-mRNA-1, IU25_05651-mRNA-1, IU25_12675-mRNA-1, IU25_10114-mRNA-1, IU25_10564-mRNA-1, IU25_09264-mRNA-1, IU25_12237-mRNA-1, IU25_08842-mRNA-1, IU25_12452-mRNA-1, IU25_11387-mRNA-1, IU25_10565-mRNA-1, IU25_06409-mRNA-1, IU25_01069-mRNA-1, IU25_06668-mRNA-1, IU25_03606-mRNA-1, IU25_03721-mRNA-1, IU25_07274-mRNA-1, IU25_12491-mRNA-1, IU25_07270-mRNA-1, IU25_01871-mRNA-1, IU25_01260-mRNA-1, IU25_08489-mRNA-1, IU25_06788-mRNA-1
Clunio marinus CMARI 15 CRK87832.1, CRL05941.1, CRK92828.1, CRL05942.1, CRL03055.1, CRK89643.1, CRK92827.1, CRK91552.1, CRK88994.1, CRK88878.1, CRK87549.1, CRL05940.1, CRK89945.1, CRK89366.1, CRK89367.1
Aedes aegypti lvpagwg AAEGYL 1 AAEL003992-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 15 EDS44027.1, EDS28075.1, EDS27632.1, EDS27635.1, EDS27633.1, EDS38872.1, EDS28111.1, EDS42619.1, EDS42273.1, EDS42277.1, EDS27638.1, EDS35917.1, EDS27629.1, EDS28073.1, EDS33448.1
Culex quinquefasciatus CQUIN 15 CPIJ002821-PA, CPIJ006454-PA, CPIJ006490-PA, CPIJ000814-PA, CPIJ014620-PA, CPIJ006641-PA, CPIJ006452-PA, CPIJ006632-PA, CPIJ011686-PA, CPIJ006636-PA, CPIJ004427-PA, CPIJ004431-PA, CPIJ006638-PA, CPIJ006635-PA, CPIJ010019-PA
Anopheles atroparvus AATRO 2 AATE008287-PA, AATE003706-PA
Anopheles sinensis china ASINEC 1 ASIC018187-PA
Anopheles dirus ADIRU 9 ADIR000003-PA, ADIR000068-PA, ADIR002334-PA, ADIR002333-PA, ADIR000487-PA, ADIR014002-PA, ADIR001442-PA, ADIR011543-PA, ADIR000001-PA
Anopheles farauti AFARA 1 AFAF020148-PA
Anopheles epiroticus AEPIR 3 AEPI011500-PA, AEPI006916-PA, AEPI001344-PA
Anopheles christyi ACHRI 2 ACHR008883-PA, ACHR003375-PA
Anopheles merus AMERU 13 AMEM008595-PA, AMEM007787-PA, AMEM006937-PA, AMEM011685-PA, AMEM013695-PA, AMEM016083-PA, AMEM016754-PA, AMEM011814-PA, AMEM007139-PA, AMEM009150-PA, AMEM000956-PA, AMEM001976-PA, AMEM004974-PA
Anopheles melas AMELA 12 AMEC009251-PA, AMEC019207-PA, AMEC007489-PA, AMEC002177-PA, AMEC018563-PA, AMEC013710-PA, AMEC017872-PA, AMEC003887-PA, AMEC006450-PA, AMEC010448-PA, AMEC006411-PA, AMEC018820-PA
Anopheles arabiensis AARAB 15 AARA018277-PA, AARA006296-PA, AARA006298-PA, AARA002920-PA, AARA018278-PA, AARA015964-PA, AARA000158-PA, AARA015963-PA, AARA010547-PA, AARA006299-PA, AARA000650-PA, AARA000157-PA, AARA005402-PA, AARA018274-PA, AARA000160-PA
Anopheles coluzzii ACOLU 14 ACOM032320-PA, ACOM026706-PA, ACOM034648-PA, ACOM041654-PA, ACOM035881-PA, ACOM038111-PA, ACOM032319-PA, ACOM038110-PA, ACOM022462-PA, ACOM026707-PA, ACOM032081-PA, ACOM032704-PA, ACOM038104-PA, ACOM022824-PA
Anopheles coluzzii ngousso ACOLUN 17 ACON011267-PA, ACON009449-PA, ACON028622-PA, ACON029734-PA, ACON010931-PA, ACON029735-PA, ACON011238-PA, ACON005253-PA, ACON011234-PA, ACON011835-PA, ACON011270-PA, ACON029737-PA, ACON011232-PA, ACON029736-PA, ACON012638-PA, ACON000216-PA, ACON009448-PA
Anopheles gambiae AGAMB 17 AGAP029734-PA, AGAP011270-PA, AGAP012638-PA, AGAP009448-PA, AGAP029735-PA, AGAP011232-PA, AGAP011267-PA, AGAP011234-PA, AGAP029737-PA, AGAP000216-PA, AGAP010931-PA, AGAP009449-PA, AGAP029736-PA, AGAP011238-PA, AGAP028622-PA, AGAP011835-PA, AGAP005253-PA
Anopheles quadriannulatus AQUAD 12 AQUA009729-PA, AQUA006117-PA, AQUA011967-PA, AQUA009048-PA, AQUA011953-PA, AQUA001251-PA, AQUA011962-PA, AQUA011963-PA, AQUA006091-PA, AQUA007251-PA, AQUA009730-PA, AQUA011900-PA
Anopheles minimus AMINI 5 AMIN007057-PA, AMIN004343-PA, AMIN008359-PA, AMIN006791-PA, AMIN006792-PA
Anopheles culicifacies ACULI 2 ACUA009956-PA, ACUA002830-PA
Anopheles funestus AFUNE 6 AFUN002591-PA, AFUN011934-PA, AFUN018990-PA, AFUN011040-PA, AFUN019115-PA, AFUN019085-PA
Anopheles stephensi indian ASTEPI 3 ASTEI06780-PA, ASTEI11197-PA, ASTEI05052-PA
Anopheles stephensi ASTEP 3 ASTE011790-PA, ASTE011069-PA, ASTE008961-PA
Anopheles albimanus AALBI 2 AALB010491-PA, AALB010380-PA
Anopheles darlingi ADARL 1 ADAC002843-PA
Drosophila willistoni DWILL 1 FBpp0248796
Drosophila pseudoobscura DPSEU 1 FBpp0278431
Drosophila persimilis DPERS 1 FBpp0181098
Drosophila ananassae DANAN 1 FBpp0115484
Drosophila melanogaster DMELA 1 FBpp0087091
Drosophila sechellia DSECH 1 FBpp0202810
Drosophila simulans DSIMU 1 FBpp0327903
Drosophila erecta DEREC 1 FBpp0138793
Drosophila yakuba DYAKU 1 FBpp0257416
Drosophila virilis DVIRI 1 FBpp0235106
Drosophila mojavensis DMOJA 1 FBpp0170187
Drosophila grimshawi DGRIM 1 FBpp0154768
Lucilia cuprina LCUPR 1 KNC25224
Musca domestica MDOME 1 MDOA012031-PA
Stomoxys calcitrans SCALC 1 SCAU005169-PA
Glossina brevipalpis GBREV 1 GBRI034999-PA
Glossina palpalis GPALP 1 GPPI040586-PA
Glossina austeni GAUST 1 GAUT000912-PA
Glossina pallidipes GPALL 1 GPAI032096-PA
Glossina morsitans GMORS 1 GMOY001584-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g6743.t1) is OG0000037. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN485_c0_g1_i8.p1
Parochlus steinenii PSTEI PSG09925, PSG06492, PSG04604
Trissopelopia nemorum TNEMO none
Paraheptagyia tonnoiri PTONN TRINITY_DN4672_c0_g1_i1.p1, TRINITY_DN7616_c0_g1_i3.p2, TRINITY_DN618_c1_g1_i1.p1, TRINITY_DN19336_c0_g1_i1.p1, TRINITY_DN1167_c0_g1_i5.p1, TRINITY_DN2960_c0_g1_i2.p1, TRINITY_DN6292_c0_g1_i2.p1, TRINITY_DN1167_c0_g2_i1.p1, TRINITY_DN30504_c0_g1_i1.p1, TRINITY_DN14366_c0_g2_i5.p1, TRINITY_DN1167_c0_g3_i1.p1, TRINITY_DN22202_c0_g1_i1.p2
Telmatogeton pecinata TPECI TRINITY_DN36013_c0_g1_i1.p1, TRINITY_DN51456_c0_g1_i1.p1, TRINITY_DN49036_c0_g1_i1.p1, TRINITY_DN61412_c0_g1_i1.p1, TRINITY_DN48573_c0_g1_i1.p1, TRINITY_DN36611_c0_g1_i1.p1
Cricotopus draysoni CDRAY TRINITY_DN72381_c0_g1_i1.p1, TRINITY_DN12385_c0_g1_i1.p1, TRINITY_DN92830_c0_g1_i1.p1, TRINITY_DN15971_c0_g1_i1.p1, TRINITY_DN105648_c0_g1_i1.p1, TRINITY_DN76196_c0_g1_i1.p1, TRINITY_DN90496_c0_g1_i1.p1, TRINITY_DN48213_c0_g1_i1.p1, TRINITY_DN65549_c0_g1_i1.p1, TRINITY_DN107269_c0_g1_i1.p1, TRINITY_DN5531_c0_g1_i1.p1, TRINITY_DN24809_c0_g1_i1.p1, TRINITY_DN13613_c0_g1_i4.p1, TRINITY_DN45259_c0_g1_i1.p1, TRINITY_DN84125_c0_g1_i1.p1, TRINITY_DN12965_c1_g1_i1.p1, TRINITY_DN37712_c0_g1_i1.p1, TRINITY_DN6925_c1_g1_i1.p1, TRINITY_DN30002_c0_g1_i1.p2, TRINITY_DN97575_c0_g1_i1.p1, TRINITY_DN2586_c0_g1_i1.p1, TRINITY_DN2973_c0_g1_i1.p1, TRINITY_DN11955_c0_g1_i2.p1, TRINITY_DN113014_c0_g1_i1.p1, TRINITY_DN2381_c0_g1_i1.p1, TRINITY_DN30443_c0_g1_i1.p1, TRINITY_DN89817_c0_g1_i1.p1, TRINITY_DN13613_c0_g2_i1.p1, TRINITY_DN16831_c1_g1_i1.p1, TRINITY_DN46185_c0_g1_i1.p1, TRINITY_DN76548_c0_g1_i1.p1, TRINITY_DN20055_c1_g1_i1.p1, TRINITY_DN32255_c0_g1_i1.p1, TRINITY_DN37439_c0_g1_i1.p1, TRINITY_DN45847_c0_g1_i1.p1, TRINITY_DN75530_c0_g1_i1.p1
Clunio marinus CMARI CRK87832.1, CRL05941.1, CRK92828.1, CRL05942.1, CRL03055.1, CRK92827.1, CRK91552.1, CRK88994.1, CRK88878.1, CRK87549.1, CRL05940.1, CRK89945.1, CRK89366.1, CRK89367.1
Cardiocladius sp CARDI TRINITY_DN34482_c0_g1_i1.p1, TRINITY_DN1993_c0_g1_i25.p1, TRINITY_DN8634_c0_g1_i1.p1, TRINITY_DN8077_c0_g1_i1.p1, TRINITY_DN8579_c0_g1_i3.p1, TRINITY_DN28234_c0_g1_i2.p1, TRINITY_DN2376_c0_g1_i25.p1, TRINITY_DN9409_c0_g1_i1.p1, TRINITY_DN64609_c0_g1_i1.p1, TRINITY_DN12776_c0_g1_i1.p2, TRINITY_DN29069_c0_g1_i1.p1, TRINITY_DN6978_c0_g1_i6.p1, TRINITY_DN4636_c0_g1_i4.p1, TRINITY_DN17303_c0_g1_i2.p1
Belgica antarctica BANTA IU25_10111-mRNA-1, IU25_10113-mRNA-1, IU25_00723-mRNA-1, IU25_02868-mRNA-1, IU25_06006-mRNA-1, IU25_00904-mRNA-1, IU25_12675-mRNA-1, IU25_10114-mRNA-1, IU25_09264-mRNA-1, IU25_12237-mRNA-1, IU25_08842-mRNA-1, IU25_12452-mRNA-1, IU25_11387-mRNA-1, IU25_01069-mRNA-1, IU25_06668-mRNA-1, IU25_03606-mRNA-1, IU25_03721-mRNA-1, IU25_01871-mRNA-1, IU25_01260-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN163357_c0_g1_i1.p1, TRINITY_DN45808_c0_g1_i1.p1, TRINITY_DN8000_c0_g2_i1.p1, TRINITY_DN77872_c0_g3_i1.p1, TRINITY_DN3213_c0_g1_i4.p1, TRINITY_DN252657_c0_g1_i1.p1, TRINITY_DN23160_c0_g1_i8.p1, TRINITY_DN39905_c0_g1_i1.p1, TRINITY_DN41514_c0_g1_i2.p1, TRINITY_DN86284_c0_g1_i1.p1, TRINITY_DN250138_c0_g1_i1.p1, TRINITY_DN227349_c0_g1_i1.p1, TRINITY_DN9239_c0_g1_i1.p1, TRINITY_DN271316_c0_g1_i1.p1, TRINITY_DN236721_c0_g1_i1.p1, TRINITY_DN41514_c0_g2_i1.p1, TRINITY_DN164707_c0_g1_i1.p1, TRINITY_DN29242_c0_g2_i1.p1, TRINITY_DN4161_c0_g1_i4.p1, TRINITY_DN77872_c0_g2_i1.p1, TRINITY_DN77872_c0_g1_i3.p1, TRINITY_DN193512_c0_g1_i1.p1, TRINITY_DN182599_c0_g1_i1.p1, TRINITY_DN201929_c0_g1_i1.p1, TRINITY_DN191990_c0_g1_i1.p1, TRINITY_DN255495_c0_g1_i1.p1, TRINITY_DN232846_c0_g1_i1.p1, TRINITY_DN48685_c0_g1_i6.p1, TRINITY_DN37501_c0_g1_i1.p1
Chironomus riparius CRIPA g3568.t1, g6647.t1, g14763.t1, g3338.t1, g10484.t1, g6646.t1, g1586.t1, g3339.t1, g3569.t1
Chironomus columbiensis CCOLU TRINITY_DN43474_c0_g1_i1.p1, TRINITY_DN21793_c0_g1_i1.p1, TRINITY_DN10846_c0_g1_i1.p1, TRINITY_DN60882_c0_g1_i1.p1, TRINITY_DN10644_c0_g2_i4.p3, TRINITY_DN1109_c0_g2_i2.p1, TRINITY_DN11487_c0_g1_i3.p1, TRINITY_DN21793_c0_g2_i2.p1, TRINITY_DN6838_c0_g1_i7.p1, TRINITY_DN14309_c0_g1_i1.p1, TRINITY_DN1109_c0_g1_i14.p1, TRINITY_DN5308_c0_g1_i1.p1, TRINITY_DN19060_c0_g1_i1.p1, TRINITY_DN16756_c0_g1_i1.p1, TRINITY_DN60844_c0_g1_i1.p1, TRINITY_DN9360_c0_g2_i2.p1, TRINITY_DN26991_c0_g1_i1.p1
Chironomus tentans CTENT g11871.t1, g11873.t1, g11872.t1, g11730.t1, g2409.t1, g5348.t1, g6084.t1, g11729.t1
Chironomus dilutus CDILU TRINITY_DN5642_c0_g1_i2.p1, TRINITY_DN8388_c0_g1_i2.p1, TRINITY_DN7521_c0_g1_i2.p1, TRINITY_DN3623_c0_g2_i2.p1, TRINITY_DN37156_c0_g1_i1.p1, TRINITY_DN7521_c1_g1_i2.p1, TRINITY_DN3623_c0_g3_i4.p1, TRINITY_DN15251_c0_g1_i1.p1, TRINITY_DN23991_c0_g1_i1.p1
Polypedilum nubifer PNUBI Pn.09884, Pn.03425, Pn.07229, Pn.13393, Pn.03158, Pn.00777, Pn.09843, Pn.11586, Pn.17042, Pn.09007
Polypedilum vanderplanki PVAND g1283.t1, g5755.t1, g1307.t1, g6743.t1, g2463.t1, g2646.t1, g5834.t1, g1304.t1, g1305.t1, g7127.t1, g1306.t1
Polypedilum pembai PPEMB g9390.t1, g2872.t1, g9950.t1, g2723.t1, g9374.t1, g9391.t1, g12692.t1, g7945.t1, g13608.t1, g14112.t1
Culicoides sonorensis CSONO CSON001820-1, CSON001819-1, CSON002617-1, CSON004595-1, CSON003654-1, CSON001816-1
Aedes aegypti lvpagwg AAEGYL AAEL003992-PA
Anopheles gambiae AGAMB none

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation