Gene loci information

Isoforms of this gene

  • There are 3 isoforms that are expressed from this gene.
  • The longest transcript is g8875.t2
  • List of isoforms

g8875.t1, g8875.t2, g8875.t4

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

This gene did not have any KEGG Ortholog annotations (KAAS, GHOSTZ).

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g8875.t2) is OG0000142. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 1 XP_012054722.1
Apis mellifera AMELL 2 GB55444-PA, GB42708-PA
Culicoides sonorensis CSONO 1 CSON007076-1
Polypedilum nubifer PNUBI 3 Pn.10799, Pn.05057, Pn.05058
Polypedilum vanderplanki PVAND 3 g8875.t2, g2191.t1, g8876.t1
Polypedilum pembai PPEMB 2 g13910.t1, g12067.t1
Belgica antarctica BANTA 4 IU25_03135-mRNA-1, IU25_03048-mRNA-1, IU25_03531-mRNA-1, IU25_04389-mRNA-1
Clunio marinus CMARI 2 CRK90046.1, CRK95517.1
Aedes aegypti lvpagwg AAEGYL 2 AAEL009275-PA, AAEL019824-PB
Culex quinquefasciatus quinquefasciatus CQUINQ 2 EDS30251.1, EDS33169.1
Culex quinquefasciatus CQUIN 2 CPIJ008212-PA, CPIJ001987-PA
Anopheles atroparvus AATRO 1 AATE003843-PA
Anopheles sinensis china ASINEC 2 ASIC004773-PA, ASIC005455-PA
Anopheles dirus ADIRU 2 ADIR003313-PA, ADIR001782-PA
Anopheles farauti AFARA 2 AFAF019274-PA, AFAF012256-PA
Anopheles epiroticus AEPIR 2 AEPI001277-PA, AEPI000096-PA
Anopheles christyi ACHRI 2 ACHR009724-PA, ACHR001294-PA
Anopheles merus AMERU 1 AMEM016927-PA
Anopheles melas AMELA 2 AMEC001636-PA, AMEC016609-PA
Anopheles arabiensis AARAB 2 AARA005604-PA, AARA001213-PA
Anopheles coluzzii ACOLU 1 ACOM023221-PA
Anopheles coluzzii ngousso ACOLUN 2 ACON011166-PA, ACON003114-PA
Anopheles gambiae AGAMB 2 AGAP003114-PA, AGAP011166-PA
Anopheles quadriannulatus AQUAD 1 AQUA005104-PA
Anopheles minimus AMINI 2 AMIN008417-PA, AMIN003805-PA
Anopheles culicifacies ACULI 2 ACUA006066-PA, ACUA009189-PA
Anopheles funestus AFUNE 2 AFUN010925-PA, AFUN009541-PB
Anopheles stephensi indian ASTEPI 2 ASTEI00264-PA, ASTEI05667-PA
Anopheles stephensi ASTEP 2 ASTE009969-PA, ASTE004948-PA
Anopheles albimanus AALBI 2 AALB007048-PA, AALB008417-PA
Anopheles darlingi ADARL 2 ADAC009028-PA, ADAC003425-PA
Drosophila willistoni DWILL 10 FBpp0244793, FBpp0248232, FBpp0245072, FBpp0249158, FBpp0249238, FBpp0244794, FBpp0251382, FBpp0241987, FBpp0248246, FBpp0251486
Drosophila pseudoobscura DPSEU 13 FBpp0282623, FBpp0281749, FBpp0278488, FBpp0285365, FBpp0272252, FBpp0276033, FBpp0306101, FBpp0276047, FBpp0274425, FBpp0275282, FBpp0282205, FBpp0276048, FBpp0278487
Drosophila persimilis DPERS 11 FBpp0181622, FBpp0181613, FBpp0188673, FBpp0178851, FBpp0181063, FBpp0178714, FBpp0178825, FBpp0181606, FBpp0181621, FBpp0191283, FBpp0181064
Drosophila ananassae DANAN 8 FBpp0116406, FBpp0123946, FBpp0120236, FBpp0114793, FBpp0123394, FBpp0344626, FBpp0351149, FBpp0114800
Drosophila melanogaster DMELA 10 FBpp0312287, FBpp0085996, FBpp0312286, FBpp0077344, FBpp0071650, FBpp0082067, FBpp0071719, FBpp0073834, FBpp0071381, FBpp0084026
Drosophila sechellia DSECH 7 FBpp0205458, FBpp0199872, FBpp0201416, FBpp0197156, FBpp0197149, FBpp0208082, FBpp0207487
Drosophila simulans DSIMU 8 FBpp0328093, FBpp0319499, FBpp0221610, FBpp0214208, FBpp0219508, FBpp0213613, FBpp0218969, FBpp0223560
Drosophila erecta DEREC 10 FBpp0139281, FBpp0135673, FBpp0136902, FBpp0129844, FBpp0131531, FBpp0143467, FBpp0129490, FBpp0139274, FBpp0373092, FBpp0139552
Drosophila yakuba DYAKU 10 FBpp0263221, FBpp0258959, FBpp0262853, FBpp0259723, FBpp0261063, FBpp0352740, FBpp0264832, FBpp0258677, FBpp0269528, FBpp0258668
Drosophila virilis DVIRI 12 FBpp0234613, FBpp0399264, FBpp0237208, FBpp0236170, FBpp0393206, FBpp0235004, FBpp0236169, FBpp0229220, FBpp0236171, FBpp0236172, FBpp0238236, FBpp0227883
Drosophila mojavensis DMOJA 10 FBpp0159301, FBpp0167949, FBpp0164633, FBpp0167975, FBpp0170069, FBpp0160975, FBpp0172005, FBpp0389557, FBpp0169460, FBpp0167950
Drosophila grimshawi DGRIM 9 FBpp0151370, FBpp0145922, FBpp0155035, FBpp0154676, FBpp0155038, FBpp0155037, FBpp0152732, FBpp0407962, FBpp0151853
Lucilia cuprina LCUPR 3 KNC29589, KNC21765, KNC31809
Musca domestica MDOME 3 MDOA006924-PA, MDOA010010-PA, MDOA001386-PA
Stomoxys calcitrans SCALC 3 SCAU011918-PA, SCAU014123-PA, SCAU007254-PA
Glossina brevipalpis GBREV 5 GBRI009792-PA, GBRI002855-PA, GBRI043576-PA, GBRI003451-PA, GBRI003888-PA
Glossina palpalis GPALP 5 GPPI005733-PA, GPPI028035-PA, GPPI024981-PA, GPPI026316-PA, GPPI046431-PA
Glossina austeni GAUST 5 GAUT019826-PA, GAUT019476-PA, GAUT049658-PA, GAUT027203-PA, GAUT004097-PA
Glossina pallidipes GPALL 6 GPAI028678-PA, GPAI001716-PA, GPAI031947-PA, GPAI030600-PA, GPAI013293-PA, GPAI025503-PA
Glossina morsitans GMORS 5 GMOY011925-PA, GMOY011455-PA, GMOY008905-PA, GMOY006267-PA, GMOY010082-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g8875.t2) is OG0002515. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN57397_c0_g1_i2.p1
Parochlus steinenii PSTEI none
Trissopelopia nemorum TNEMO TRINITY_DN38174_c0_g1_i1.p2
Paraheptagyia tonnoiri PTONN none
Telmatogeton pecinata TPECI TRINITY_DN2890_c2_g1_i1.p1, TRINITY_DN0_c1482_g1_i1.p1, TRINITY_DN6240_c2_g1_i1.p2, TRINITY_DN4856_c0_g1_i2.p4, TRINITY_DN22165_c1_g1_i1.p1
Cricotopus draysoni CDRAY TRINITY_DN81443_c0_g1_i1.p1, TRINITY_DN94531_c0_g1_i1.p1, TRINITY_DN67399_c0_g1_i1.p1, TRINITY_DN47360_c0_g1_i1.p1, TRINITY_DN68455_c0_g1_i1.p1
Clunio marinus CMARI none
Cardiocladius sp CARDI TRINITY_DN47487_c0_g1_i1.p1, TRINITY_DN12058_c0_g1_i2.p1
Belgica antarctica BANTA none
Kiefferophyes invenustulus KINVE TRINITY_DN30378_c2_g1_i1.p2, TRINITY_DN3952_c4_g1_i1.p1, TRINITY_DN30378_c0_g1_i2.p3, TRINITY_DN92483_c2_g1_i1.p1, TRINITY_DN89382_c0_g1_i1.p1, TRINITY_DN254175_c0_g1_i1.p1, TRINITY_DN19929_c0_g4_i1.p1, TRINITY_DN26622_c1_g1_i1.p2, TRINITY_DN19929_c0_g1_i2.p5, TRINITY_DN495_c5_g1_i4.p2, TRINITY_DN30378_c0_g3_i1.p1, TRINITY_DN19929_c2_g1_i1.p1, TRINITY_DN19929_c0_g3_i1.p1, TRINITY_DN30378_c1_g1_i1.p2, TRINITY_DN26168_c0_g1_i1.p2, TRINITY_DN570_c10_g2_i1.p1
Chironomus riparius CRIPA none
Chironomus columbiensis CCOLU TRINITY_DN30980_c1_g1_i1.p1, TRINITY_DN34032_c0_g1_i2.p1, TRINITY_DN52705_c0_g1_i1.p1, TRINITY_DN30980_c2_g1_i1.p1, TRINITY_DN30980_c1_g2_i1.p1
Chironomus tentans CTENT none
Chironomus dilutus CDILU none
Polypedilum nubifer PNUBI Pn.05057
Polypedilum vanderplanki PVAND g8875.t2
Polypedilum pembai PPEMB none
Culicoides sonorensis CSONO none
Aedes aegypti lvpagwg AAEGYL none
Anopheles gambiae AGAMB none

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation