Gene loci information

Isoforms of this gene

  • There are 4 isoforms that are expressed from this gene.
  • The longest transcript is g10037.t2
  • List of isoforms

g10037.t1, g10037.t2, g10037.t3, g10037.t4

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Pathway

  • This gene belongs to the following 2 pathways
## Warning in keggs == k_to_ko$V1: longer object length is not a multiple of
## shorter object length
ko04010
ko04014
ko04510
ko04010
ko04014

This gene has too many mapped pathways (>3). Please look at the original KEGG entry above for pathway visualization.

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g10037.t2) is OG0006264. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 1 XP_012056222.1
Apis mellifera AMELL 1 GB51953-PA
Culicoides sonorensis CSONO 1 CSON014634-1
Polypedilum nubifer PNUBI 1 Pn.03470
Polypedilum vanderplanki PVAND 1 g10037.t2
Polypedilum pembai PPEMB 1 g9902.t1
Belgica antarctica BANTA 2 IU25_11010-mRNA-1, IU25_11009-mRNA-1
Clunio marinus CMARI 1 CRK97308.1
Aedes aegypti lvpagwg AAEGYL 1 AAEL019838-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 2 EDS30563.1, EDS30560.1
Culex quinquefasciatus CQUIN 2 CPIJ008341-PA, CPIJ008338-PA
Anopheles atroparvus AATRO 2 AATE015089-PA, AATE009055-PA
Anopheles sinensis china ASINEC 1 ASIC011527-PA
Anopheles dirus ADIRU 2 ADIR009989-PA, ADIR009990-PA
Anopheles farauti AFARA 1 AFAF020199-PA
Anopheles epiroticus AEPIR 2 AEPI009670-PA, AEPI009671-PA
Anopheles christyi ACHRI 3 ACHR009990-PA, ACHR004733-PA, ACHR004734-PA
Anopheles merus AMERU 2 AMEM009940-PA, AMEM011321-PA
Anopheles melas AMELA 3 AMEC013364-PA, AMEC010152-PA, AMEC017988-PA
Anopheles arabiensis AARAB 2 AARA001714-PA, AARA001715-PA
Anopheles coluzzii ACOLU 1 ACOM033825-PA
Anopheles coluzzii ngousso ACOLUN 1 ACON001238-PB
Anopheles gambiae AGAMB 1 AGAP001238-PB
Anopheles quadriannulatus AQUAD 1 AQUA016487-PA
Anopheles minimus AMINI 2 AMIN002234-PA, AMIN002233-PA
Anopheles culicifacies ACULI 4 ACUA024996-PA, ACUA007945-PA, ACUA015762-PA, ACUA013859-PA
Anopheles funestus AFUNE 1 AFUN020298-PA
Anopheles stephensi indian ASTEPI 1 ASTEI08074-PA
Anopheles stephensi ASTEP 2 ASTE005983-PA, ASTE005982-PA
Anopheles albimanus AALBI 2 AALB009336-PA, AALB009337-PA
Anopheles darlingi ADARL 2 ADAC011172-PA, ADAC011193-PA
Drosophila willistoni DWILL 0 none
Drosophila pseudoobscura DPSEU 0 none
Drosophila persimilis DPERS 0 none
Drosophila ananassae DANAN 0 none
Drosophila melanogaster DMELA 0 none
Drosophila sechellia DSECH 0 none
Drosophila simulans DSIMU 0 none
Drosophila erecta DEREC 0 none
Drosophila yakuba DYAKU 0 none
Drosophila virilis DVIRI 0 none
Drosophila mojavensis DMOJA 0 none
Drosophila grimshawi DGRIM 0 none
Lucilia cuprina LCUPR 0 none
Musca domestica MDOME 0 none
Stomoxys calcitrans SCALC 0 none
Glossina brevipalpis GBREV 0 none
Glossina palpalis GPALP 0 none
Glossina austeni GAUST 0 none
Glossina pallidipes GPALL 0 none
Glossina morsitans GMORS 0 none

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g10037.t2) is OG0002487. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON none
Parochlus steinenii PSTEI PSG02736, PSG02738, PSG02740, PSG02737
Trissopelopia nemorum TNEMO TRINITY_DN42856_c0_g1_i1.p1, TRINITY_DN40590_c0_g1_i1.p1
Paraheptagyia tonnoiri PTONN TRINITY_DN28794_c0_g1_i1.p1
Telmatogeton pecinata TPECI TRINITY_DN1729_c0_g1_i29.p1
Cricotopus draysoni CDRAY TRINITY_DN99173_c0_g1_i1.p1, TRINITY_DN100832_c0_g1_i1.p1
Clunio marinus CMARI CRK97309.1, CRK97308.1
Cardiocladius sp CARDI TRINITY_DN3251_c0_g1_i4.p1, TRINITY_DN13794_c0_g1_i3.p1, TRINITY_DN11153_c0_g1_i7.p1, TRINITY_DN15525_c0_g1_i1.p1
Belgica antarctica BANTA IU25_11010-mRNA-1, IU25_11009-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN192443_c0_g1_i1.p1, TRINITY_DN5326_c0_g1_i13.p1, TRINITY_DN44330_c0_g1_i1.p1, TRINITY_DN277734_c0_g1_i1.p1, TRINITY_DN18305_c0_g1_i3.p1
Chironomus riparius CRIPA g7179.t1, g8706.t1
Chironomus columbiensis CCOLU TRINITY_DN16771_c0_g1_i2.p1, TRINITY_DN45785_c0_g1_i2.p1
Chironomus tentans CTENT g1525.t1, g17733.t1
Chironomus dilutus CDILU TRINITY_DN6138_c0_g1_i3.p1
Polypedilum nubifer PNUBI Pn.03470
Polypedilum vanderplanki PVAND g10037.t2
Polypedilum pembai PPEMB g9902.t1
Culicoides sonorensis CSONO CSON014634-1, CSON014623-1
Aedes aegypti lvpagwg AAEGYL AAEL019838-PA
Anopheles gambiae AGAMB AGAP001238-PB

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation