Gene loci information

Isoforms of this gene

  • There are 1 isoforms that are expressed from this gene.
  • The longest transcript is g13870.t1
  • List of isoforms

g13870.t1

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

This gene did not have any KEGG Ortholog annotations (KAAS, GHOSTZ).

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g13870.t1) is OG0000015. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 10 XP_012058269.1, XP_012060357.1, XP_012057202.1, XP_012055476.1, XP_012057579.1, XP_012060739.1, XP_012058397.1, XP_012056083.1, XP_012062152.1, XP_012058313.1
Apis mellifera AMELL 15 GB40303-PA, GB40128-PA, GB47659-PA, GB45710-PA, GB44016-PA, GB45711-PA, GB51667-PA, GB45709-PA, GB53295-PA, GB51518-PA, GB44768-PA, GB53441-PA, GB41167-PA, GB47057-PA, GB48271-PA
Culicoides sonorensis CSONO 10 CSON010993-1, CSON002392-1, CSON011245-1, CSON002540-1, CSON001027-1, CSON011752-1, CSON001793-1, CSON010034-1, CSON007313-1, CSON007310-1
Polypedilum nubifer PNUBI 11 Pn.03856, Pn.09956, Pn.00014, Pn.15222, Pn.00152, Pn.13391, Pn.04907, Pn.00989, Pn.08641, Pn.13853, Pn.05218
Polypedilum vanderplanki PVAND 8 g6947.t1, g5836.t1, g6794.t1, g13870.t1, g2505.t1, g384.t1, g12361.t2, g12939.t1
Polypedilum pembai PPEMB 8 g596.t1, g280.t1, g4853.t1, g2364.t1, g7451.t1, g1416.t1, g4965.t1, g7943.t1
Belgica antarctica BANTA 10 IU25_10591-mRNA-1, IU25_06147-mRNA-1, IU25_05520-mRNA-1, IU25_01285-mRNA-1, IU25_07421-mRNA-1, IU25_06922-mRNA-1, IU25_06555-mRNA-1, IU25_00001-mRNA-1, IU25_06139-mRNA-1, IU25_04266-mRNA-1
Clunio marinus CMARI 11 CRK93831.1, CRK95732.1, CRK88125.1, CRK99547.1, CRK95331.1, CRK87399.1, CRK91048.1, CRL00660.1, CRK91946.1, CRK89083.1, CRL00202.1
Aedes aegypti lvpagwg AAEGYL 8 AAEL010244-PC, AAEL010576-PT, AAEL019601-PA, AAEL008426-PH, AAEL002435-PD, AAEL010015-PB, AAEL024283-PE, AAEL009212-PG
Culex quinquefasciatus quinquefasciatus CQUINQ 18 EDS40761.1, EDS31249.1, EDS38430.1, EDS44249.1, EDS41871.1, EDS27012.1, EDS37236.1, EDS39562.1, EDS35330.1, EDS35885.1, EDS31251.1, EDS39011.1, EDS30102.1, EDS33413.1, EDS39561.1, EDS34041.1, EDS30103.1, EDS35887.1
Culex quinquefasciatus CQUIN 18 CPIJ012486-PA, CPIJ003269-PA, CPIJ001652-PA, CPIJ003894-PA, CPIJ009649-PA, CPIJ013651-PA, CPIJ001650-PA, CPIJ011216-PA, CPIJ018271-PA, CPIJ008080-PA, CPIJ005014-PA, CPIJ011214-PA, CPIJ013275-PA, CPIJ015575-PA, CPIJ010166-PA, CPIJ008081-PA, CPIJ010853-PA, CPIJ013652-PA
Anopheles atroparvus AATRO 14 AATE005106-PA, AATE021220-PA, AATE020156-PA, AATE013283-PA, AATE012097-PA, AATE015539-PA, AATE014029-PA, AATE002878-PA, AATE004140-PA, AATE020447-PA, AATE014754-PA, AATE010958-PA, AATE020707-PA, AATE019620-PA
Anopheles sinensis china ASINEC 13 ASIC000331-PA, ASIC012851-PA, ASIC003540-PA, ASIC011650-PA, ASIC001038-PA, ASIC012850-PA, ASIC007627-PA, ASIC010826-PA, ASIC002966-PA, ASIC005145-PA, ASIC006997-PA, ASIC003644-PA, ASIC021245-PA
Anopheles dirus ADIRU 15 ADIR010659-PA, ADIR008299-PA, ADIR007662-PA, ADIR001098-PA, ADIR009006-PA, ADIR000888-PA, ADIR009823-PA, ADIR004654-PA, ADIR002704-PA, ADIR008106-PA, ADIR005358-PA, ADIR002048-PA, ADIR011046-PA, ADIR009313-PA, ADIR006667-PA
Anopheles farauti AFARA 14 AFAF013839-PA, AFAF013167-PA, AFAF017671-PA, AFAF002593-PA, AFAF001727-PA, AFAF001515-PA, AFAF000028-PA, AFAF001142-PA, AFAF015104-PA, AFAF005531-PA, AFAF010793-PA, AFAF015054-PA, AFAF013829-PA, AFAF015119-PA
Anopheles epiroticus AEPIR 17 AEPI004191-PA, AEPI002213-PA, AEPI000347-PA, AEPI002760-PA, AEPI004039-PA, AEPI011086-PA, AEPI007541-PA, AEPI011456-PA, AEPI007524-PA, AEPI005656-PA, AEPI007526-PA, AEPI003034-PA, AEPI001930-PA, AEPI011038-PA, AEPI001336-PA, AEPI008317-PA, AEPI005373-PA
Anopheles christyi ACHRI 8 ACHR006991-PA, ACHR000084-PA, ACHR009482-PA, ACHR001504-PA, ACHR001661-PA, ACHR002216-PA, ACHR003258-PA, ACHR008348-PA
Anopheles merus AMERU 12 AMEM002539-PA, AMEM018120-PA, AMEM013089-PA, AMEM004521-PA, AMEM017224-PA, AMEM016901-PA, AMEM007676-PA, AMEM011792-PA, AMEM010289-PA, AMEM015214-PA, AMEM003157-PA, AMEM018281-PA
Anopheles melas AMELA 17 AMEC018397-PA, AMEC005035-PA, AMEC019582-PA, AMEC014739-PA, AMEC008881-PA, AMEC008378-PA, AMEC022021-PA, AMEC020799-PA, AMEC021814-PA, AMEC008634-PA, AMEC000521-PA, AMEC010950-PA, AMEC012546-PA, AMEC017598-PA, AMEC021166-PA, AMEC016997-PA, AMEC013344-PA
Anopheles arabiensis AARAB 11 AARA002936-PA, AARA006515-PA, AARA004577-PA, AARA006596-PA, AARA001090-PA, AARA003710-PA, AARA011074-PA, AARA000168-PA, AARA005098-PA, AARA007507-PA, AARA002937-PA
Anopheles coluzzii ACOLU 11 ACOM035386-PA, ACOM030624-PA, ACOM029885-PA, ACOM024817-PA, ACOM037719-PA, ACOM038096-PA, ACOM037723-PA, ACOM042120-PA, ACOM028393-PA, ACOM028538-PA, ACOM037228-PA
Anopheles coluzzii ngousso ACOLUN 12 ACON003685-PA, ACON011247-PA, ACON003537-PB, ACON003439-PR, ACON000080-PA, ACON008506-PA, ACON029774-PA, ACON012669-PA, ACON005245-PE, ACON010063-PA, ACON029581-PB, ACON001073-PC
Anopheles gambiae AGAMB 12 AGAP005245-PA, AGAP000080-PE, AGAP003537-PB, AGAP008506-PA, AGAP003685-PA, AGAP029774-PA, AGAP001073-PC, AGAP029581-PB, AGAP012669-PA, AGAP011247-PA, AGAP003439-PA, AGAP010063-PA
Anopheles quadriannulatus AQUAD 16 AQUA000029-PA, AQUA001676-PA, AQUA002453-PA, AQUA003537-PA, AQUA005959-PA, AQUA005958-PA, AQUA010890-PA, AQUA001118-PA, AQUA009213-PA, AQUA005659-PA, AQUA009076-PA, AQUA010785-PA, AQUA017156-PA, AQUA011808-PA, AQUA006291-PA, AQUA007591-PA
Anopheles minimus AMINI 16 AMIN008233-PA, AMIN003102-PA, AMIN004584-PA, AMIN005746-PA, AMIN005316-PA, AMIN011584-PA, AMIN007911-PA, AMIN006240-PA, AMIN005045-PA, AMIN002149-PA, AMIN004691-PA, AMIN010924-PA, AMIN011585-PA, AMIN000864-PA, AMIN006656-PA, AMIN008351-PA
Anopheles culicifacies ACULI 20 ACUA000499-PA, ACUA028102-PA, ACUA007136-PA, ACUA009150-PA, ACUA000190-PA, ACUA014563-PA, ACUA028203-PA, ACUA007674-PA, ACUA028470-PA, ACUA012382-PA, ACUA010477-PA, ACUA020638-PA, ACUA021303-PA, ACUA007427-PA, ACUA012923-PA, ACUA014305-PA, ACUA028152-PA, ACUA016640-PA, ACUA000277-PA, ACUA022992-PA
Anopheles funestus AFUNE 11 AFUN020484-PB, AFUN011046-PA, AFUN020787-PG, AFUN002421-PA, AFUN009337-PA, AFUN020415-PA, AFUN020338-PD, AFUN001998-PA, AFUN002332-PQ, AFUN000096-PA, AFUN002007-PB
Anopheles stephensi indian ASTEPI 16 ASTEI05997-PA, ASTEI06306-PA, ASTEI05996-PA, ASTEI03335-PA, ASTEI00174-PA, ASTEI04403-PA, ASTEI01791-PA, ASTEI04404-PA, ASTEI00183-PA, ASTEI03915-PA, ASTEI06772-PA, ASTEI07757-PA, ASTEI06224-PA, ASTEI10141-PA, ASTEI07450-PA, ASTEI09330-PA
Anopheles stephensi ASTEP 18 ASTE007259-PA, ASTE008373-PA, ASTE004822-PA, ASTE008102-PA, ASTE001186-PA, ASTE011015-PA, ASTE001328-PA, ASTE011062-PA, ASTE007260-PA, ASTE011661-PA, ASTE016096-PA, ASTE007202-PA, ASTE002249-PA, ASTE008099-PA, ASTE001187-PA, ASTE016116-PA, ASTE003492-PA, ASTE009683-PA
Anopheles albimanus AALBI 15 AALB010356-PA, AALB006606-PA, AALB002527-PA, AALB006622-PA, AALB004333-PA, AALB005185-PA, AALB004291-PA, AALB002837-PA, AALB004332-PA, AALB010873-PA, AALB008624-PA, AALB006747-PA, AALB001929-PA, AALB000010-PA, AALB007953-PA
Anopheles darlingi ADARL 13 ADAC000782-PA, ADAC005732-PA, ADAC004258-PA, ADAC006272-PA, ADAC000554-PA, ADAC006419-PA, ADAC003172-PA, ADAC010556-PA, ADAC005741-PA, ADAC000579-PA, ADAC002845-PA, ADAC007847-PA, ADAC002056-PA
Drosophila willistoni DWILL 11 FBpp0376441, FBpp0248635, FBpp0377285, FBpp0249269, FBpp0254382, FBpp0374810, FBpp0378933, FBpp0374992, FBpp0376177, FBpp0375345, FBpp0375618
Drosophila pseudoobscura DPSEU 9 FBpp0297327, FBpp0339007, FBpp0337556, FBpp0330920, FBpp0276669, FBpp0293771, FBpp0307104, FBpp0340346, FBpp0336617
Drosophila persimilis DPERS 12 FBpp0191259, FBpp0179111, FBpp0178997, FBpp0187165, FBpp0188100, FBpp0182822, FBpp0191258, FBpp0187289, FBpp0181299, FBpp0174620, FBpp0178373, FBpp0181296
Drosophila ananassae DANAN 7 FBpp0341748, FBpp0351298, FBpp0343681, FBpp0349142, FBpp0351093, FBpp0344495, FBpp0115471
Drosophila melanogaster DMELA 9 FBpp0085955, FBpp0088384, FBpp0070790, FBpp0310310, FBpp0312468, FBpp0073935, FBpp0112152, FBpp0290499, FBpp0303432
Drosophila sechellia DSECH 14 FBpp0197919, FBpp0207247, FBpp0193926, FBpp0201980, FBpp0201400, FBpp0204077, FBpp0199053, FBpp0192486, FBpp0192487, FBpp0200176, FBpp0192491, FBpp0195717, FBpp0196009, FBpp0201988
Drosophila simulans DSIMU 8 FBpp0318852, FBpp0325479, FBpp0317177, FBpp0315885, FBpp0215654, FBpp0223814, FBpp0314793, FBpp0215168
Drosophila erecta DEREC 7 FBpp0367821, FBpp0368186, FBpp0367287, FBpp0366897, FBpp0139534, FBpp0136478, FBpp0365604
Drosophila yakuba DYAKU 10 FBpp0258941, FBpp0360525, FBpp0261143, FBpp0353400, FBpp0352914, FBpp0262249, FBpp0361047, FBpp0362484, FBpp0354193, FBpp0364603
Drosophila virilis DVIRI 10 FBpp0398861, FBpp0234549, FBpp0233544, FBpp0396298, FBpp0235090, FBpp0230453, FBpp0237517, FBpp0391655, FBpp0400560, FBpp0396329
Drosophila mojavensis DMOJA 11 FBpp0383075, FBpp0383498, FBpp0390108, FBpp0380736, FBpp0165023, FBpp0388568, FBpp0170168, FBpp0172343, FBpp0386952, FBpp0168555, FBpp0380523
Drosophila grimshawi DGRIM 11 FBpp0420591, FBpp0422207, FBpp0410122, FBpp0154527, FBpp0154753, FBpp0415742, FBpp0404553, FBpp0418763, FBpp0421550, FBpp0413833, FBpp0419398
Lucilia cuprina LCUPR 9 KNC23445, KNC32108, KNC26538, KNC29869, KNC26331, KNC23972, KNC28653, KNC30169, KNC32355
Musca domestica MDOME 15 MDOA016529-PA, MDOA012578-PA, MDOA003453-PA, MDOA006233-PB, MDOA004507-PR, MDOA000620-PA, MDOA011370-PA, MDOA009913-PA, MDOA000349-PA, MDOA016710-PA, MDOA000853-PA, MDOA001119-PB, MDOA001944-PA, MDOA002202-PB, MDOA013378-PB
Stomoxys calcitrans SCALC 13 SCAU008206-PA, SCAU003654-PB, SCAU001193-PA, SCAU007799-PC, SCAU016033-PA, SCAU011783-PC, SCAU007890-PJ, SCAU003799-PH, SCAU012938-PB, SCAU011901-PA, SCAU009559-PA, SCAU006167-PB, SCAU005494-PB
Glossina brevipalpis GBREV 17 GBRI025217-PA, GBRI026096-PA, GBRI030809-PA, GBRI024250-PA, GBRI021900-PA, GBRI030808-PA, GBRI031660-PA, GBRI003464-PA, GBRI026101-PA, GBRI002271-PA, GBRI020191-PA, GBRI020193-PA, GBRI036932-PA, GBRI040757-PA, GBRI042331-PA, GBRI033888-PA, GBRI042319-PA
Glossina palpalis GPALP 18 GPPI051149-PA, GPPI036859-PA, GPPI039729-PA, GPPI040651-PA, GPPI031261-PA, GPPI030077-PA, GPPI000483-PA, GPPI003810-PA, GPPI044287-PA, GPPI017327-PA, GPPI019174-PA, GPPI023081-PA, GPPI014537-PA, GPPI013724-PA, GPPI014818-PA, GPPI021315-PA, GPPI014546-PA, GPPI047985-PA
Glossina austeni GAUST 16 GAUT051564-PA, GAUT037933-PA, GAUT038334-PA, GAUT046453-PA, GAUT027563-PA, GAUT008150-PA, GAUT047254-PA, GAUT018867-PA, GAUT013716-PA, GAUT031752-PA, GAUT023190-PA, GAUT035057-PA, GAUT025404-PA, GAUT013714-PA, GAUT038033-PA, GAUT008151-PA
Glossina pallidipes GPALL 17 GPAI041727-PA, GPAI028614-PA, GPAI046146-PA, GPAI015165-PA, GPAI041709-PA, GPAI015166-PA, GPAI030945-PA, GPAI000379-PA, GPAI024163-PA, GPAI023755-PA, GPAI031941-PA, GPAI041518-PA, GPAI021620-PA, GPAI028359-PA, GPAI046130-PA, GPAI029815-PA, GPAI005545-PA
Glossina morsitans GMORS 11 GMOY000819-PA, GMOY001244-PA, GMOY005159-PA, GMOY010664-PA, GMOY000033-PA, GMOY004036-PA, GMOY006688-PA, GMOY010078-PA, GMOY006309-PA, GMOY006320-PA, GMOY000541-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g13870.t1) is OG0002219. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN5427_c0_g3_i2.p1
Parochlus steinenii PSTEI PSG12425
Trissopelopia nemorum TNEMO TRINITY_DN5481_c0_g1_i13.p1
Paraheptagyia tonnoiri PTONN TRINITY_DN208_c2_g1_i1.p1, TRINITY_DN97_c5_g1_i3.p1, TRINITY_DN2491_c0_g3_i1.p1
Telmatogeton pecinata TPECI TRINITY_DN726_c0_g1_i1.p1, TRINITY_DN1394_c0_g6_i4.p1, TRINITY_DN0_c6622_g1_i2.p1, TRINITY_DN3079_c3_g1_i1.p2, TRINITY_DN0_c5797_g1_i1.p1
Cricotopus draysoni CDRAY TRINITY_DN63417_c0_g1_i1.p1
Clunio marinus CMARI CRK87399.1
Cardiocladius sp CARDI TRINITY_DN377_c0_g2_i12.p1
Belgica antarctica BANTA IU25_06138-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN25243_c0_g1_i1.p1, TRINITY_DN17240_c1_g2_i1.p1, TRINITY_DN17240_c1_g1_i6.p1, TRINITY_DN164059_c0_g2_i1.p1, TRINITY_DN25243_c2_g1_i1.p1, TRINITY_DN65_c1_g1_i2.p1, TRINITY_DN19656_c0_g1_i1.p2, TRINITY_DN17240_c3_g1_i3.p1, TRINITY_DN69671_c0_g1_i5.p1, TRINITY_DN17240_c0_g1_i7.p1, TRINITY_DN19656_c0_g2_i1.p2, TRINITY_DN25243_c1_g1_i1.p1, TRINITY_DN25243_c1_g2_i1.p1
Chironomus riparius CRIPA g2088.t1, g347.t1
Chironomus columbiensis CCOLU TRINITY_DN1403_c1_g1_i2.p1
Chironomus tentans CTENT g13336.t1, g14400.t1, g14894.t1
Chironomus dilutus CDILU TRINITY_DN2864_c1_g2_i2.p1
Polypedilum nubifer PNUBI Pn.15877
Polypedilum vanderplanki PVAND g13870.t1
Polypedilum pembai PPEMB g5327.t1
Culicoides sonorensis CSONO CSON006285-2
Aedes aegypti lvpagwg AAEGYL none
Anopheles gambiae AGAMB none

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation