Gene loci information

Isoforms of this gene

  • There are 1 isoforms that are expressed from this gene.
  • The longest transcript is g17670.t1
  • List of isoforms

g17670.t1

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

This gene did not have any KEGG Ortholog annotations (KAAS, GHOSTZ).

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g17670.t1) is OG0000040. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 5 XP_012059089.1, XP_012059085.1, XP_012055623.1, XP_012055711.1, XP_012055624.1
Apis mellifera AMELL 5 GB47485-PA, GB44765-PA, GB47505-PA, GB47408-PA, GB44339-PA
Culicoides sonorensis CSONO 0 none
Polypedilum nubifer PNUBI 2 Pn.13246, Pn.13528
Polypedilum vanderplanki PVAND 22 g2444.t1, g8460.t1, g6755.t1, g8900.t1, g17755.t1, g5224.t1, g7436.t1, g17756.t1, g8328.t1, g200.t1, g8245.t1, g7425.t1, g8906.t1, g17670.t1, g1946.t1, g8510.t1, g7403.t1, g7412.t1, g738.t1, g7428.t1, g7433.t1, g8325.t1
Polypedilum pembai PPEMB 9 g1151.t1, g9660.t1, g7249.t1, g6644.t1, g3965.t1, g9235.t1, g14660.t1, g11300.t1, g9295.t1
Belgica antarctica BANTA 1 IU25_12911-mRNA-1
Clunio marinus CMARI 8 CRL07069.1, CRL07066.1, CRL07052.1, CRL07061.1, CRL07056.1, CRL07077.1, CRL07047.1, CRL07073.1
Aedes aegypti lvpagwg AAEGYL 36 AAEL022935-PA, AAEL021983-PA, AAEL023817-PA, AAEL023072-PA, AAEL015683-PA, AAEL020177-PA, AAEL022164-PA, AAEL023013-PA, AAEL015682-PA, AAEL023305-PA, AAEL023203-PA, AAEL023016-PA, AAEL021300-PA, AAEL023479-PA, AAEL022111-PA, AAEL020063-PA, AAEL020023-PA, AAEL024024-PA, AAEL022550-PA, AAEL019636-PA, AAEL023180-PA, AAEL023589-PA, AAEL022824-PA, AAEL020426-PA, AAEL020030-PA, AAEL022860-PA, AAEL025497-PA, AAEL021229-PA, AAEL020157-PA, AAEL021358-PA, AAEL021297-PA, AAEL022281-PA, AAEL026033-PA, AAEL021223-PA, AAEL022390-PA, AAEL021001-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 16 EDS37394.1, EDS36805.1, EDS37349.1, EDS34368.1, EDS30848.1, EDS41768.1, EDS37372.1, EDS37390.1, EDS45400.1, EDS39835.1, EDS37381.1, EDS26753.1, EDS37344.1, EDS34375.1, EDS37359.1, EDS34169.1
Culex quinquefasciatus CQUIN 16 CPIJ012422-PA, CPIJ012404-PA, CPIJ012381-PA, CPIJ012426-PA, CPIJ020276-PA, CPIJ010361-PA, CPIJ010354-PA, CPIJ012376-PA, CPIJ019736-PA, CPIJ012391-PA, CPIJ005866-PA, CPIJ013999-PA, CPIJ017539-PA, CPIJ012413-PA, CPIJ015005-PA, CPIJ011803-PA
Anopheles atroparvus AATRO 2 AATE016269-PA, AATE004463-PA
Anopheles sinensis china ASINEC 1 ASIC018314-PA
Anopheles dirus ADIRU 1 ADIR001878-PA
Anopheles farauti AFARA 1 AFAF009653-PA
Anopheles epiroticus AEPIR 1 AEPI000853-PA
Anopheles christyi ACHRI 1 ACHR003278-PA
Anopheles merus AMERU 0 none
Anopheles melas AMELA 0 none
Anopheles arabiensis AARAB 1 AARA003291-PA
Anopheles coluzzii ACOLU 2 ACOM035937-PA, ACOM026456-PA
Anopheles coluzzii ngousso ACOLUN 8 ACON012199-PA, ACON003912-PA, ACON012560-PA, ACON012555-PA, ACON012710-PA, ACON012202-PA, ACON012871-PA, ACON012201-PA
Anopheles gambiae AGAMB 9 AGAP012201-PA, AGAP012199-PA, AGAP003912-PA, AGAP012871-PA, AGAP012560-PA, AGAP012894-PA, AGAP012202-PA, AGAP012555-PA, AGAP012710-PA
Anopheles quadriannulatus AQUAD 0 none
Anopheles minimus AMINI 1 AMIN006962-PA
Anopheles culicifacies ACULI 2 ACUA001397-PA, ACUA002452-PA
Anopheles funestus AFUNE 1 AFUN008651-PA
Anopheles stephensi indian ASTEPI 3 ASTEI11772-PA, ASTEI10805-PA, ASTEI024940-PA
Anopheles stephensi ASTEP 1 ASTE001659-PA
Anopheles albimanus AALBI 3 AALB007558-PA, AALB007076-PA, AALB007073-PA
Anopheles darlingi ADARL 1 ADAC006366-PA
Drosophila willistoni DWILL 8 FBpp0247971, FBpp0252768, FBpp0252623, FBpp0242988, FBpp0247616, FBpp0239517, FBpp0374119, FBpp0250174
Drosophila pseudoobscura DPSEU 8 FBpp0285013, FBpp0285016, FBpp0334434, FBpp0284154, FBpp0285012, FBpp0274452, FBpp0285014, FBpp0285015
Drosophila persimilis DPERS 8 FBpp0187664, FBpp0181907, FBpp0187668, FBpp0180051, FBpp0187660, FBpp0187965, FBpp0179968, FBpp0187662
Drosophila ananassae DANAN 22 FBpp0126619, FBpp0126051, FBpp0123736, FBpp0122148, FBpp0119216, FBpp0341777, FBpp0124713, FBpp0122176, FBpp0122471, FBpp0125785, FBpp0122446, FBpp0123355, FBpp0125763, FBpp0125807, FBpp0126617, FBpp0119083, FBpp0125708, FBpp0122469, FBpp0342531, FBpp0125741, FBpp0123871, FBpp0126573
Drosophila melanogaster DMELA 23 FBpp0091143, FBpp0091119, FBpp0091115, FBpp0091145, FBpp0091125, FBpp0091151, FBpp0091135, FBpp0091131, FBpp0091117, FBpp0091133, FBpp0091113, FBpp0091141, FBpp0091123, FBpp0091155, FBpp0091147, FBpp0091127, FBpp0091153, FBpp0091121, FBpp0091137, FBpp0085281, FBpp0091149, FBpp0091129, FBpp0091139
Drosophila sechellia DSECH 44 FBpp0191557, FBpp0198885, FBpp0191865, FBpp0195091, FBpp0194612, FBpp0193550, FBpp0198019, FBpp0196950, FBpp0195016, FBpp0195018, FBpp0194664, FBpp0200286, FBpp0195085, FBpp0198923, FBpp0194680, FBpp0193225, FBpp0194668, FBpp0201085, FBpp0198389, FBpp0195019, FBpp0197949, FBpp0200754, FBpp0191526, FBpp0198419, FBpp0200805, FBpp0197645, FBpp0192529, FBpp0200766, FBpp0192638, FBpp0193191, FBpp0193414, FBpp0198387, FBpp0197947, FBpp0194690, FBpp0192663, FBpp0198902, FBpp0193116, FBpp0200296, FBpp0193193, FBpp0195137, FBpp0199188, FBpp0200907, FBpp0192640, FBpp0194442
Drosophila simulans DSIMU 1 FBpp0220707
Drosophila erecta DEREC 25 FBpp0140034, FBpp0129560, FBpp0131503, FBpp0131127, FBpp0129568, FBpp0140038, FBpp0131131, FBpp0131582, FBpp0129499, FBpp0131574, FBpp0131578, FBpp0134919, FBpp0138377, FBpp0131607, FBpp0138394, FBpp0131129, FBpp0131576, FBpp0140040, FBpp0137230, FBpp0131581, FBpp0129564, FBpp0138391, FBpp0131603, FBpp0129566, FBpp0129562
Drosophila yakuba DYAKU 4 FBpp0259644, FBpp0259487, FBpp0257997, FBpp0259645
Drosophila virilis DVIRI 15 FBpp0395270, FBpp0237945, FBpp0237947, FBpp0237938, FBpp0237940, FBpp0237934, FBpp0234226, FBpp0231877, FBpp0230759, FBpp0229581, FBpp0230760, FBpp0229042, FBpp0237936, FBpp0237933, FBpp0229860
Drosophila mojavensis DMOJA 12 FBpp0163096, FBpp0173371, FBpp0173370, FBpp0163739, FBpp0163118, FBpp0166895, FBpp0171092, FBpp0173375, FBpp0173373, FBpp0163140, FBpp0166107, FBpp0166786
Drosophila grimshawi DGRIM 27 FBpp0158960, FBpp0157787, FBpp0157395, FBpp0158953, FBpp0157452, FBpp0157258, FBpp0158949, FBpp0156139, FBpp0147841, FBpp0144876, FBpp0158966, FBpp0157673, FBpp0158955, FBpp0158964, FBpp0156398, FBpp0157256, FBpp0157687, FBpp0404528, FBpp0146325, FBpp0420566, FBpp0157263, FBpp0158944, FBpp0158962, FBpp0158951, FBpp0157253, FBpp0158958, FBpp0157254
Lucilia cuprina LCUPR 0 none
Musca domestica MDOME 4 MDOA004013-PA, MDOA010678-PA, MDOA004640-PD, MDOA015901-PA
Stomoxys calcitrans SCALC 1 SCAU016313-PA
Glossina brevipalpis GBREV 3 GBRI025833-PA, GBRI002177-PA, GBRI022286-PA
Glossina palpalis GPALP 3 GPPI033994-PA, GPPI006716-PA, GPPI025916-PA
Glossina austeni GAUST 1 GAUT033308-PA
Glossina pallidipes GPALL 1 GPAI011936-PA
Glossina morsitans GMORS 4 GMOY002747-PA, GMOY005739-PA, GMOY009985-PA, GMOY000629-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g17670.t1) is OG0047401. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON none
Parochlus steinenii PSTEI none
Trissopelopia nemorum TNEMO none
Paraheptagyia tonnoiri PTONN none
Telmatogeton pecinata TPECI none
Cricotopus draysoni CDRAY none
Clunio marinus CMARI none
Cardiocladius sp CARDI none
Belgica antarctica BANTA none
Kiefferophyes invenustulus KINVE none
Chironomus riparius CRIPA none
Chironomus columbiensis CCOLU none
Chironomus tentans CTENT none
Chironomus dilutus CDILU none
Polypedilum nubifer PNUBI none
Polypedilum vanderplanki PVAND g17670.t1, g200.t1
Polypedilum pembai PPEMB none
Culicoides sonorensis CSONO none
Aedes aegypti lvpagwg AAEGYL none
Anopheles gambiae AGAMB none

This gene has not been clustered with other genes, so there is no gene tree.

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation