Gene loci information

Isoforms of this gene

  • There are 2 isoforms that are expressed from this gene.
  • The longest transcript is g13318.t1
  • List of isoforms

g13318.t1, g13318.t2

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

Pathway

  • This gene belongs to the following 1 pathways
ko00512
ko00514
ko01100

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g13318.t1) is OG0000079. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 3 XP_012059804.1, XP_012063745.1, XP_012056321.1
Apis mellifera AMELL 6 GB46960-PA, GB48503-PA, GB46961-PA, GB49852-PA, GB55993-PA, GB53685-PA
Culicoides sonorensis CSONO 5 CSON012712-1, CSON007930-3, CSON014959-1, CSON008226-1, CSON002865-1
Polypedilum nubifer PNUBI 8 Pn.08037, Pn.12797, Pn.02584, Pn.08039, Pn.09653, Pn.08038, Pn.10791, Pn.08036
Polypedilum vanderplanki PVAND 6 g2200.t1, g2201.t1, g2198.t1, g13318.t1, g16691.t1, g6549.t1
Polypedilum pembai PPEMB 6 g3449.t1, g513.t1, g4953.t1, g580.t1, g9704.t1, g579.t1
Belgica antarctica BANTA 11 IU25_07627-mRNA-1, IU25_04123-mRNA-1, IU25_09230-mRNA-1, IU25_13313-mRNA-1, IU25_10219-mRNA-1, IU25_07306-mRNA-1, IU25_06792-mRNA-1, IU25_08120-mRNA-1, IU25_10106-mRNA-1, IU25_12724-mRNA-1, IU25_12243-mRNA-1
Clunio marinus CMARI 9 CRK93970.1, CRK88374.1, CRK88373.1, CRK88371.1, CRL08211.1, CRK88372.1, CRL00395.1, CRL04953.1, CRK91403.1
Aedes aegypti lvpagwg AAEGYL 7 AAEL019605-PA, AAEL001151-PA, AAEL001146-PA, AAEL026410-PA, AAEL022849-PA, AAEL008252-PA, AAEL006452-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 6 EDS45702.1, EDS32893.1, EDS45700.1, EDS30536.1, EDS45704.1, EDS45703.1
Culex quinquefasciatus CQUIN 6 CPIJ005698-PA, CPIJ005697-PA, CPIJ009408-PA, CPIJ007696-PA, CPIJ005699-PA, CPIJ005695-PA
Anopheles atroparvus AATRO 6 AATE016190-PA, AATE001262-PA, AATE014413-PA, AATE011607-PA, AATE020839-PA, AATE005933-PA
Anopheles sinensis china ASINEC 11 ASIC019294-PA, ASIC019283-PA, ASIC017279-PA, ASIC019465-PA, ASIC019432-PA, ASIC019476-PA, ASIC019443-PA, ASIC019454-PA, ASIC013105-PA, ASIC019272-PA, ASIC019421-PA
Anopheles dirus ADIRU 6 ADIR009559-PA, ADIR006375-PA, ADIR004292-PA, ADIR010924-PA, ADIR009555-PA, ADIR009554-PA
Anopheles farauti AFARA 6 AFAF007054-PA, AFAF001932-PA, AFAF005622-PA, AFAF004125-PA, AFAF009208-PA, AFAF007376-PA
Anopheles epiroticus AEPIR 6 AEPI001746-PA, AEPI004342-PA, AEPI004345-PA, AEPI006811-PA, AEPI005603-PA, AEPI004343-PA
Anopheles christyi ACHRI 6 ACHR007335-PA, ACHR004625-PA, ACHR008079-PA, ACHR008139-PA, ACHR004293-PA, ACHR009887-PA
Anopheles merus AMERU 4 AMEM013829-PA, AMEM004862-PA, AMEM003933-PA, AMEM016169-PA
Anopheles melas AMELA 7 AMEC003799-PA, AMEC019286-PA, AMEC011502-PA, AMEC008077-PA, AMEC012604-PA, AMEC009323-PA, AMEC006784-PA
Anopheles arabiensis AARAB 12 AARA017044-PA, AARA003340-PA, AARA003342-PA, AARA017049-PA, AARA011779-PA, AARA009204-PA, AARA017048-PA, AARA017047-PA, AARA004906-PA, AARA017045-PA, AARA010983-PA, AARA017046-PA
Anopheles coluzzii ACOLU 5 ACOM031598-PA, ACOM030315-PA, ACOM024250-PA, ACOM026366-PA, ACOM026359-PA
Anopheles coluzzii ngousso ACOLUN 11 ACON029779-PA, ACON029766-PA, ACON012256-PA, ACON028708-PA, ACON029781-PA, ACON008229-PA, ACON029780-PA, ACON006881-PA, ACON008613-PA, ACON028709-PA, ACON029765-PA
Anopheles gambiae AGAMB 11 AGAP029781-PA, AGAP028708-PA, AGAP008229-PA, AGAP029765-PA, AGAP008613-PA, AGAP012256-PA, AGAP029766-PA, AGAP029779-PA, AGAP006881-PA, AGAP029780-PA, AGAP028709-PA
Anopheles quadriannulatus AQUAD 5 AQUA007793-PA, AQUA007791-PA, AQUA001827-PA, AQUA005223-PA, AQUA010555-PA
Anopheles minimus AMINI 6 AMIN007653-PA, AMIN006912-PA, AMIN006914-PA, AMIN006054-PA, AMIN009137-PA, AMIN009136-PA
Anopheles culicifacies ACULI 6 ACUA023694-PA, ACUA015498-PA, ACUA026704-PA, ACUA008321-PA, ACUA010657-PA, ACUA021625-PA
Anopheles funestus AFUNE 11 AFUN016073-PA, AFUN016071-PA, AFUN016075-PA, AFUN010905-PA, AFUN001415-PA, AFUN016072-PA, AFUN006364-PA, AFUN020637-PA, AFUN016074-PA, AFUN016076-PA, AFUN001412-PA
Anopheles stephensi indian ASTEPI 7 ASTEI03041-PA, ASTEI02446-PA, ASTEI04620-PA, ASTEI02445-PA, ASTEI02444-PA, ASTEI02442-PA, ASTEI10720-PA
Anopheles stephensi ASTEP 5 ASTE005079-PA, ASTE005649-PA, ASTE003218-PA, ASTE003839-PA, ASTE003841-PA
Anopheles albimanus AALBI 4 AALB010178-PA, AALB010176-PA, AALB000182-PA, AALB002006-PA
Anopheles darlingi ADARL 8 ADAC002573-PA, ADAC002571-PA, ADAC008420-PA, ADAC002574-PA, ADAC002568-PA, ADAC008438-PA, ADAC002218-PA, ADAC002572-PA
Drosophila willistoni DWILL 4 FBpp0379608, FBpp0239801, FBpp0239868, FBpp0250675
Drosophila pseudoobscura DPSEU 3 FBpp0278791, FBpp0280113, FBpp0277121
Drosophila persimilis DPERS 3 FBpp0182910, FBpp0175062, FBpp0175928
Drosophila ananassae DANAN 3 FBpp0115444, FBpp0346262, FBpp0345390
Drosophila melanogaster DMELA 3 FBpp0078663, FBpp0088130, FBpp0086258
Drosophila sechellia DSECH 3 FBpp0199512, FBpp0202301, FBpp0201516
Drosophila simulans DSIMU 3 FBpp0223925, FBpp0313566, FBpp0208679
Drosophila erecta DEREC 3 FBpp0371584, FBpp0142863, FBpp0129321
Drosophila yakuba DYAKU 3 FBpp0355933, FBpp0356560, FBpp0269256
Drosophila virilis DVIRI 3 FBpp0229366, FBpp0391940, FBpp0399948
Drosophila mojavensis DMOJA 4 FBpp0160103, FBpp0166203, FBpp0169275, FBpp0167709
Drosophila grimshawi DGRIM 3 FBpp0414350, FBpp0410443, FBpp0154292
Lucilia cuprina LCUPR 4 KNC32200, KNC28682, KNC32201, KNC29299
Musca domestica MDOME 3 MDOA011338-PB, MDOA005246-PB, MDOA013519-PA
Stomoxys calcitrans SCALC 4 SCAU007643-PA, SCAU016063-PA, SCAU013753-PA, SCAU003376-PA
Glossina brevipalpis GBREV 2 GBRI045581-PA, GBRI019782-PA
Glossina palpalis GPALP 4 GPPI026905-PA, GPPI013184-PA, GPPI026890-PA, GPPI039147-PA
Glossina austeni GAUST 4 GAUT004980-PA, GAUT004967-PA, GAUT014673-PA, GAUT023891-PA
Glossina pallidipes GPALL 5 GPAI003586-PA, GPAI039687-PA, GPAI003588-PA, GPAI003587-PA, GPAI000195-PA
Glossina morsitans GMORS 5 GMOY001044-PA, GMOY006070-PA, GMOY005897-PA, GMOY003651-PA, GMOY001042-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g13318.t1) is OG0008504. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN19380_c0_g1_i4.p1
Parochlus steinenii PSTEI PSG02246
Trissopelopia nemorum TNEMO TRINITY_DN9655_c0_g1_i2.p1
Paraheptagyia tonnoiri PTONN TRINITY_DN1047_c0_g3_i1.p1
Telmatogeton pecinata TPECI TRINITY_DN14473_c0_g2_i8.p1
Cricotopus draysoni CDRAY TRINITY_DN7202_c1_g1_i1.p1
Clunio marinus CMARI CRK91403.1
Cardiocladius sp CARDI TRINITY_DN4358_c0_g1_i6.p1
Belgica antarctica BANTA IU25_12243-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN282431_c0_g1_i1.p1
Chironomus riparius CRIPA g9054.t1
Chironomus columbiensis CCOLU TRINITY_DN5724_c0_g1_i1.p1
Chironomus tentans CTENT g7010.t1
Chironomus dilutus CDILU TRINITY_DN12950_c0_g1_i1.p1
Polypedilum nubifer PNUBI Pn.02584
Polypedilum vanderplanki PVAND g13318.t1
Polypedilum pembai PPEMB g4953.t1
Culicoides sonorensis CSONO CSON012712-1
Aedes aegypti lvpagwg AAEGYL AAEL006452-PA
Anopheles gambiae AGAMB AGAP008229-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation