Gene loci information

Isoforms of this gene

  • There are 1 isoforms that are expressed from this gene.
  • The longest transcript is g16975.t1
  • List of isoforms

g16975.t1

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

Pathway

This gene does not belong to any pathways.

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g16975.t1) is OG0000159. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 1 XP_012054849.1
Apis mellifera AMELL 2 GB49689-PA, GB47126-PA
Culicoides sonorensis CSONO 2 CSON001193-1, CSON001190-1
Polypedilum nubifer PNUBI 5 Pn.03741, Pn.15973, Pn.12729, Pn.03459, Pn.05347
Polypedilum vanderplanki PVAND 3 g6489.t1, g14656.t1, g16975.t1
Polypedilum pembai PPEMB 2 g9572.t1, g14132.t1
Belgica antarctica BANTA 1 IU25_01050-mRNA-1
Clunio marinus CMARI 0 none
Aedes aegypti lvpagwg AAEGYL 1 AAEL006014-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 2 EDS45917.1, EDS30856.1
Culex quinquefasciatus CQUIN 2 CPIJ017588-PA, CPIJ007579-PA
Anopheles atroparvus AATRO 6 AATE014400-PA, AATE019233-PA, AATE017374-PA, AATE013459-PA, AATE003381-PA, AATE008405-PA
Anopheles sinensis china ASINEC 6 ASIC016008-PA, ASIC003404-PA, ASIC012706-PA, ASIC000169-PA, ASIC000171-PA, ASIC000170-PA
Anopheles dirus ADIRU 5 ADIR000079-PA, ADIR011596-PA, ADIR015872-PA, ADIR015871-PA, ADIR015870-PA
Anopheles farauti AFARA 6 AFAF007386-PA, AFAF001540-PA, AFAF010327-PA, AFAF015333-PA, AFAF013075-PA, AFAF009112-PA
Anopheles epiroticus AEPIR 6 AEPI009596-PA, AEPI006641-PA, AEPI000705-PA, AEPI010718-PA, AEPI000890-PA, AEPI010717-PA
Anopheles christyi ACHRI 4 ACHR008272-PA, ACHR008301-PA, ACHR001207-PA, ACHR005516-PA
Anopheles merus AMERU 8 AMEM012091-PA, AMEM007427-PA, AMEM006955-PA, AMEM011316-PA, AMEM004412-PA, AMEM003858-PA, AMEM016823-PA, AMEM005191-PA
Anopheles melas AMELA 7 AMEC003752-PA, AMEC015674-PA, AMEC003220-PA, AMEC000291-PA, AMEC021104-PA, AMEC005359-PA, AMEC004863-PA
Anopheles arabiensis AARAB 8 AARA018395-PA, AARA018397-PA, AARA017411-PA, AARA008971-PA, AARA000140-PA, AARA008970-PA, AARA017412-PA, AARA018396-PA
Anopheles coluzzii ACOLU 7 ACOM027724-PA, ACOM027584-PA, ACOM027483-PA, ACOM038145-PA, ACOM027487-PA, ACOM027492-PA, ACOM027723-PA
Anopheles coluzzii ngousso ACOLUN 9 ACON013282-PA, ACON011216-PA, ACON029195-PA, ACON029194-PA, ACON013327-PA, ACON010899-PA, ACON029167-PA, ACON010810-PA, ACON010734-PA
Anopheles gambiae AGAMB 9 AGAP029195-PA, AGAP011216-PA, AGAP029194-PA, AGAP013282-PA, AGAP029167-PA, AGAP013327-PA, AGAP010899-PA, AGAP010734-PA, AGAP010810-PA
Anopheles quadriannulatus AQUAD 7 AQUA002358-PA, AQUA003275-PA, AQUA003274-PA, AQUA002536-PA, AQUA002357-PA, AQUA006102-PA, AQUA002537-PA
Anopheles minimus AMINI 7 AMIN016002-PA, AMIN007008-PA, AMIN015997-PA, AMIN008368-PA, AMIN016001-PA, AMIN015996-PA, AMIN007007-PA
Anopheles culicifacies ACULI 7 ACUA003065-PA, ACUA017328-PA, ACUA006002-PA, ACUA001388-PA, ACUA020685-PA, ACUA023392-PA, ACUA021412-PA
Anopheles funestus AFUNE 8 AFUN016445-PA, AFUN019066-PA, AFUN021931-PA, AFUN021932-PA, AFUN016444-PA, AFUN016243-PA, AFUN016244-PA, AFUN021404-PA
Anopheles stephensi indian ASTEPI 4 ASTEI08424-PA, ASTEI08987-PA, ASTEI06792-PA, ASTEI04171-PA
Anopheles stephensi ASTEP 7 ASTE015997-PA, ASTE000086-PA, ASTE016355-PA, ASTE015998-PA, ASTE016356-PA, ASTE008251-PA, ASTE008179-PA
Anopheles albimanus AALBI 9 AALB009828-PA, AALB016040-PA, AALB007801-PA, AALB016038-PA, AALB016037-PA, AALB010580-PA, AALB010446-PA, AALB010579-PA, AALB016039-PA
Anopheles darlingi ADARL 6 ADAC002187-PA, ADAC002186-PA, ADAC002179-PA, ADAC002183-PA, ADAC006384-PA, ADAC002185-PA
Drosophila willistoni DWILL 2 FBpp0242989, FBpp0242590
Drosophila pseudoobscura DPSEU 2 FBpp0281783, FBpp0284196
Drosophila persimilis DPERS 2 FBpp0187098, FBpp0188652
Drosophila ananassae DANAN 2 FBpp0120269, FBpp0121106
Drosophila melanogaster DMELA 2 FBpp0293660, FBpp0088343
Drosophila sechellia DSECH 2 FBpp0196674, FBpp0196869
Drosophila simulans DSIMU 2 FBpp0323972, FBpp0316066
Drosophila erecta DEREC 2 FBpp0135343, FBpp0140452
Drosophila yakuba DYAKU 2 FBpp0271124, FBpp0269610
Drosophila virilis DVIRI 2 FBpp0224983, FBpp0398782
Drosophila mojavensis DMOJA 2 FBpp0173068, FBpp0172962
Drosophila grimshawi DGRIM 2 FBpp0409358, FBpp0151973
Lucilia cuprina LCUPR 2 KNC34772, KNC34773
Musca domestica MDOME 3 MDOA014082-PA, MDOA004226-PA, MDOA006901-PB
Stomoxys calcitrans SCALC 3 SCAU015388-PA, SCAU013752-PA, SCAU001084-PC
Glossina brevipalpis GBREV 2 GBRI006828-PA, GBRI006850-PA
Glossina palpalis GPALP 1 GPPI011208-PA
Glossina austeni GAUST 1 GAUT026128-PA
Glossina pallidipes GPALL 3 GPAI013092-PA, GPAI006154-PA, GPAI039043-PA
Glossina morsitans GMORS 2 GMOY002466-PA, GMOY002462-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g16975.t1) is OG0000367. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN2097_c0_g1_i7.p1, TRINITY_DN13399_c0_g1_i1.p1
Parochlus steinenii PSTEI PSG08198
Trissopelopia nemorum TNEMO TRINITY_DN38124_c0_g1_i1.p1, TRINITY_DN9124_c0_g1_i1.p1, TRINITY_DN12642_c0_g1_i1.p1
Paraheptagyia tonnoiri PTONN none
Telmatogeton pecinata TPECI TRINITY_DN52038_c0_g1_i1.p1
Cricotopus draysoni CDRAY TRINITY_DN41641_c0_g1_i1.p1, TRINITY_DN93337_c0_g1_i1.p1, TRINITY_DN55518_c0_g1_i1.p1, TRINITY_DN44295_c0_g1_i1.p1
Clunio marinus CMARI CRL05204.1
Cardiocladius sp CARDI TRINITY_DN5410_c0_g1_i1.p1, TRINITY_DN55295_c0_g1_i1.p1
Belgica antarctica BANTA IU25_01050-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN18550_c0_g1_i1.p1, TRINITY_DN50639_c0_g1_i1.p1, TRINITY_DN43555_c0_g1_i1.p1, TRINITY_DN191939_c0_g1_i1.p1, TRINITY_DN244312_c0_g1_i1.p1
Chironomus riparius CRIPA g7004.t1, g17808.t1, g16667.t1, g7272.t1, g15172.t1, g4840.t1, g13238.t1, g1598.t1, g17899.t1, g10208.t1, g8031.t1, g3931.t1
Chironomus columbiensis CCOLU TRINITY_DN29724_c0_g2_i1.p1, TRINITY_DN2483_c0_g1_i3.p1, TRINITY_DN12790_c0_g1_i1.p1, TRINITY_DN9091_c0_g1_i1.p1, TRINITY_DN29724_c0_g1_i1.p1, TRINITY_DN72127_c0_g1_i1.p1, TRINITY_DN53750_c0_g1_i1.p1, TRINITY_DN1918_c0_g1_i1.p1, TRINITY_DN77451_c0_g1_i1.p1, TRINITY_DN16666_c0_g1_i1.p1, TRINITY_DN19890_c0_g1_i1.p1, TRINITY_DN19890_c0_g2_i1.p1
Chironomus tentans CTENT g5597.t1, g8084.t1, g8085.t1, g8083.t1, g11819.t1, g1728.t1, g10327.t1, g14891.t1, g1824.t1
Chironomus dilutus CDILU TRINITY_DN2926_c0_g1_i2.p1, TRINITY_DN48538_c0_g1_i1.p1, TRINITY_DN4347_c0_g9_i1.p1, TRINITY_DN4347_c0_g5_i1.p1, TRINITY_DN4347_c0_g1_i1.p1, TRINITY_DN7782_c0_g1_i4.p1, TRINITY_DN2987_c2_g1_i1.p1, TRINITY_DN35740_c0_g1_i1.p1, TRINITY_DN4347_c0_g3_i1.p1, TRINITY_DN49429_c0_g1_i1.p1, TRINITY_DN4452_c0_g1_i1.p1, TRINITY_DN48237_c0_g1_i1.p1
Polypedilum nubifer PNUBI Pn.03741, Pn.15973, Pn.03459, Pn.05347
Polypedilum vanderplanki PVAND g6489.t1, g14656.t1, g16975.t1
Polypedilum pembai PPEMB g9572.t1, g14132.t1
Culicoides sonorensis CSONO CSON001193-1, CSON001190-1
Aedes aegypti lvpagwg AAEGYL AAEL006014-PA
Anopheles gambiae AGAMB AGAP029195-PA, AGAP011216-PA, AGAP029194-PA, AGAP013282-PA, AGAP029167-PA, AGAP013327-PA, AGAP010899-PA, AGAP010734-PA, AGAP010810-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation