Gene loci information

Isoforms of this gene

  • There are 1 isoforms that are expressed from this gene.
  • The longest transcript is g11523.t1
  • List of isoforms

g11523.t1

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

This gene did not have any KEGG Ortholog annotations (KAAS, GHOSTZ).

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g11523.t1) is OG0000032. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 11 XP_012058489.1, XP_012058526.1, XP_012061890.1, XP_012058533.1, XP_012058527.1, XP_012058878.1, XP_012058534.1, XP_012058490.1, XP_012060684.1, XP_012058528.1, XP_012054167.1
Apis mellifera AMELL 8 GB50195-PA, GB49197-PA, GB45277-PA, GB45278-PA, GB48573-PA, GB43189-PA, GB53135-PA, GB48853-PA
Culicoides sonorensis CSONO 12 CSON010266-1, CSON010187-3, CSON012958-1, CSON010346-1, CSON001219-1, CSON013961-1, CSON001220-1, CSON002942-2, CSON013802-1, CSON010349-1, CSON010264-1, CSON004245-1
Polypedilum nubifer PNUBI 9 Pn.14889, Pn.02988, Pn.11912, Pn.08990, Pn.04035, Pn.15480, Pn.09464, Pn.11599, Pn.14888
Polypedilum vanderplanki PVAND 10 g154.t1, g10983.t1, g155.t1, g8918.t1, g11523.t1, g2628.t1, g2627.t1, g2632.t1, g6968.t1, g17759.t1
Polypedilum pembai PPEMB 7 g10334.t1, g8121.t1, g3854.t1, g11649.t1, g7417.t1, g13545.t1, g11650.t1
Belgica antarctica BANTA 8 IU25_09486-mRNA-1, IU25_12866-mRNA-1, IU25_03835-mRNA-1, IU25_03251-mRNA-1, IU25_09199-mRNA-1, IU25_06038-mRNA-1, IU25_04662-mRNA-1, IU25_00780-mRNA-1
Clunio marinus CMARI 8 CRK98089.1, CRK99302.1, CRL03642.1, CRK87082.1, CRL03663.1, CRL03641.1, CRK89767.1, CRL07776.1
Aedes aegypti lvpagwg AAEGYL 8 AAEL027539-PA, AAEL023958-PA, AAEL019847-PA, AAEL012395-PA, AAEL018267-PB, AAEL005929-PC, AAEL005918-PA, AAEL025460-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 9 EDS30176.1, EDS30179.1, EDS30713.1, EDS30177.1, EDS44400.1, EDS43379.1, EDS30178.1, EDS36162.1, EDS30712.1
Culex quinquefasciatus CQUIN 9 CPIJ008282-PA, CPIJ016918-PA, CPIJ001311-PA, CPIJ008284-PA, CPIJ011652-PA, CPIJ004604-PA, CPIJ001310-PA, CPIJ008281-PA, CPIJ008283-PA
Anopheles atroparvus AATRO 6 AATE006316-PA, AATE002083-PA, AATE017080-PA, AATE017890-PA, AATE016391-PA, AATE011668-PA
Anopheles sinensis china ASINEC 8 ASIC014258-PA, ASIC007949-PA, ASIC002584-PA, ASIC014256-PA, ASIC021520-PA, ASIC014257-PA, ASIC014260-PA, ASIC014255-PA
Anopheles dirus ADIRU 5 ADIR009055-PA, ADIR007689-PA, ADIR008380-PA, ADIR008379-PA, ADIR002825-PA
Anopheles farauti AFARA 8 AFAF016651-PA, AFAF016490-PA, AFAF003417-PA, AFAF002776-PA, AFAF021802-PA, AFAF007502-PA, AFAF015445-PA, AFAF017067-PA
Anopheles epiroticus AEPIR 6 AEPI005202-PA, AEPI005722-PA, AEPI002372-PA, AEPI011394-PA, AEPI009129-PA, AEPI002371-PA
Anopheles christyi ACHRI 7 ACHR007008-PA, ACHR006191-PA, ACHR006414-PA, ACHR003505-PA, ACHR009169-PA, ACHR006927-PA, ACHR003882-PA
Anopheles merus AMERU 6 AMEM013933-PA, AMEM010608-PA, AMEM001304-PA, AMEM015765-PA, AMEM008704-PA, AMEM008414-PA
Anopheles melas AMELA 12 AMEC015931-PA, AMEC018041-PA, AMEC020844-PA, AMEC015899-PA, AMEC000852-PA, AMEC002188-PA, AMEC002765-PA, AMEC005486-PA, AMEC016467-PA, AMEC020229-PA, AMEC005487-PA, AMEC005929-PA
Anopheles arabiensis AARAB 7 AARA016661-PA, AARA001315-PA, AARA000462-PA, AARA011618-PA, AARA018469-PA, AARA018470-PA, AARA008301-PA
Anopheles coluzzii ACOLU 7 ACOM041051-PA, ACOM041049-PA, ACOM035694-PA, ACOM041050-PA, ACOM039761-PA, ACOM024278-PA, ACOM023848-PA
Anopheles coluzzii ngousso ACOLUN 9 ACON029686-PA, ACON004603-PA, ACON029457-PA, ACON001777-PA, ACON003221-PA, ACON001775-PA, ACON006427-PA, ACON012467-PA, ACON012735-PA
Anopheles gambiae AGAMB 9 AGAP012467-PA, AGAP001775-PA, AGAP004603-PA, AGAP003221-PA, AGAP006427-PA, AGAP012735-PA, AGAP029686-PA, AGAP001777-PA, AGAP029457-PA
Anopheles quadriannulatus AQUAD 7 AQUA007943-PA, AQUA007941-PA, AQUA004116-PA, AQUA007942-PA, AQUA004117-PA, AQUA008073-PA, AQUA006262-PA
Anopheles minimus AMINI 5 AMIN007943-PA, AMIN000710-PA, AMIN000709-PA, AMIN000670-PA, AMIN000020-PA
Anopheles culicifacies ACULI 7 ACUA026170-PA, ACUA028061-PA, ACUA013349-PA, ACUA014034-PA, ACUA012342-PA, ACUA007335-PA, ACUA024960-PA
Anopheles funestus AFUNE 7 AFUN007483-PA, AFUN009878-PA, AFUN016162-PA, AFUN016160-PA, AFUN016185-PA, AFUN009879-PA, AFUN016161-PA
Anopheles stephensi indian ASTEPI 2 ASTEI07464-PA, ASTEI10271-PA
Anopheles stephensi ASTEP 7 ASTE007063-PA, ASTE009979-PA, ASTE016152-PA, ASTE016151-PA, ASTE016153-PA, ASTE009978-PA, ASTE001080-PA
Anopheles albimanus AALBI 5 AALB003453-PA, AALB008359-PA, AALB003454-PA, AALB009536-PA, AALB005085-PA
Anopheles darlingi ADARL 6 ADAC010689-PA, ADAC010688-PA, ADAC010113-PA, ADAC010108-PA, ADAC003507-PA, ADAC008826-PA
Drosophila willistoni DWILL 11 FBpp0374003, FBpp0253862, FBpp0253995, FBpp0376624, FBpp0251810, FBpp0253996, FBpp0251811, FBpp0377046, FBpp0240444, FBpp0243449, FBpp0250802
Drosophila pseudoobscura DPSEU 7 FBpp0284228, FBpp0283176, FBpp0283177, FBpp0280228, FBpp0276924, FBpp0284695, FBpp0279514
Drosophila persimilis DPERS 9 FBpp0186081, FBpp0189986, FBpp0183015, FBpp0183013, FBpp0174864, FBpp0184246, FBpp0177983, FBpp0177984, FBpp0176504
Drosophila ananassae DANAN 11 FBpp0350897, FBpp0127411, FBpp0117880, FBpp0348436, FBpp0123899, FBpp0121570, FBpp0119796, FBpp0115301, FBpp0119795, FBpp0346040, FBpp0348750
Drosophila melanogaster DMELA 11 FBpp0302854, FBpp0291666, FBpp0088845, FBpp0084755, FBpp0080682, FBpp0303069, FBpp0291237, FBpp0079228, FBpp0071545, FBpp0271768, FBpp0297173
Drosophila sechellia DSECH 11 FBpp0197211, FBpp0202595, FBpp0208367, FBpp0204955, FBpp0194500, FBpp0205431, FBpp0198784, FBpp0205430, FBpp0194250, FBpp0198785, FBpp0204766
Drosophila simulans DSIMU 10 FBpp0324741, FBpp0328414, FBpp0328343, FBpp0315884, FBpp0325581, FBpp0219823, FBpp0220817, FBpp0324610, FBpp0209053, FBpp0220066
Drosophila erecta DEREC 11 FBpp0136779, FBpp0130196, FBpp0141999, FBpp0140081, FBpp0139334, FBpp0371982, FBpp0130197, FBpp0372466, FBpp0130883, FBpp0372429, FBpp0139692
Drosophila yakuba DYAKU 11 FBpp0268851, FBpp0258736, FBpp0363054, FBpp0258022, FBpp0358582, FBpp0255801, FBpp0258230, FBpp0268852, FBpp0269191, FBpp0264283, FBpp0256050
Drosophila virilis DVIRI 8 FBpp0228927, FBpp0237817, FBpp0225966, FBpp0225977, FBpp0228928, FBpp0393478, FBpp0398859, FBpp0398741
Drosophila mojavensis DMOJA 10 FBpp0383745, FBpp0388401, FBpp0159613, FBpp0171889, FBpp0159509, FBpp0380555, FBpp0159511, FBpp0386990, FBpp0168962, FBpp0171888
Drosophila grimshawi DGRIM 13 FBpp0157237, FBpp0156977, FBpp0152687, FBpp0144793, FBpp0405264, FBpp0152686, FBpp0404113, FBpp0144792, FBpp0420126, FBpp0148205, FBpp0151234, FBpp0151235, FBpp0148206
Lucilia cuprina LCUPR 11 KNC31638, KNC30673, KNC29591, KNC27490, KNC27403, KNC32832, KNC27491, KNC30422, KNC31347, KNC31637, KNC29779
Musca domestica MDOME 11 MDOA014706-PA, MDOA007554-PB, MDOA003866-PA, MDOA006434-PB, MDOA013875-PA, MDOA014894-PA, MDOA000564-PB, MDOA013266-PB, MDOA011404-PA, MDOA002074-PA, MDOA015390-PB
Stomoxys calcitrans SCALC 8 SCAU015275-PA, SCAU013603-PA, SCAU011510-PA, SCAU012060-PA, SCAU012846-PB, SCAU013737-PA, SCAU015144-PA, SCAU014062-PA
Glossina brevipalpis GBREV 5 GBRI021780-PA, GBRI042186-PA, GBRI043763-PA, GBRI031601-PA, GBRI021779-PA
Glossina palpalis GPALP 6 GPPI000608-PA, GPPI001826-PA, GPPI034220-PA, GPPI029593-PA, GPPI046832-PA, GPPI026761-PA
Glossina austeni GAUST 5 GAUT027999-PA, GAUT039795-PA, GAUT030955-PA, GAUT030954-PA, GAUT029800-PA
Glossina pallidipes GPALL 5 GPAI032118-PA, GPAI032117-PA, GPAI045152-PA, GPAI018040-PA, GPAI044207-PA
Glossina morsitans GMORS 4 GMOY003900-PA, GMOY006234-PA, GMOY003833-PA, GMOY009859-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g11523.t1) is OG0007997. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON none
Parochlus steinenii PSTEI PSG04317
Trissopelopia nemorum TNEMO TRINITY_DN3775_c0_g1_i4.p1
Paraheptagyia tonnoiri PTONN TRINITY_DN1775_c0_g1_i6.p1
Telmatogeton pecinata TPECI TRINITY_DN62662_c0_g1_i1.p1, TRINITY_DN32035_c0_g1_i1.p1
Cricotopus draysoni CDRAY TRINITY_DN47966_c0_g1_i1.p1, TRINITY_DN100626_c0_g1_i1.p1, TRINITY_DN64149_c0_g1_i1.p1
Clunio marinus CMARI CRK99302.1, CRK89767.1
Cardiocladius sp CARDI none
Belgica antarctica BANTA IU25_04662-mRNA-1
Kiefferophyes invenustulus KINVE none
Chironomus riparius CRIPA g12536.t1
Chironomus columbiensis CCOLU TRINITY_DN1346_c0_g2_i1.p1
Chironomus tentans CTENT g1319.t1
Chironomus dilutus CDILU TRINITY_DN6855_c0_g2_i10.p1
Polypedilum nubifer PNUBI Pn.11912
Polypedilum vanderplanki PVAND g11523.t1
Polypedilum pembai PPEMB g13545.t1
Culicoides sonorensis CSONO CSON001220-1
Aedes aegypti lvpagwg AAEGYL AAEL005929-PC
Anopheles gambiae AGAMB AGAP003221-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation